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美国阿伯丁安格斯牛与美国常见肉牛品种的遗传差异和多样性比较。

Genetic Distinctness and Diversity of American Aberdeen Cattle Compared to Common Beef Breeds in the United States.

机构信息

Department of Animal Sciences, North Dakota State University, Fargo, ND 58108, USA.

School of Natural Resource Sciences, North Dakota State University, Fargo, ND 58108, USA.

出版信息

Genes (Basel). 2023 Sep 22;14(10):1842. doi: 10.3390/genes14101842.

DOI:10.3390/genes14101842
PMID:37895190
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10606367/
Abstract

American Aberdeen (AD) cattle in the USA descend from an Aberdeen Angus herd originally brought to the Trangie Agricultural Research Centre, New South Wales, AUS. Although put under specific selection pressure for yearling growth rate, AD remain genomically uncharacterized. The objective was to characterize the genetic diversity and structure of purebred and crossbred AD cattle relative to seven common USA beef breeds using available whole-genome SNP data. A total of 1140 animals consisting of 404 purebred ( = 8 types) and 736 admixed individuals ( = 10 types) was used. Genetic diversity metrics, an analysis of molecular variance, and a discriminant analysis of principal components were employed. When linkage disequilibrium was not accounted for, markers influenced basic diversity parameter estimates, especially for AD cattle. Even so, intrapopulation and interpopulation estimates separate AD cattle from other purebred types (e.g., Latter's pairwise F ranged from 0.1129 to 0.2209), where AD cattle were less heterozygous and had lower allelic richness than other purebred types. The admixed AD-influenced cattle were intermediate to other admixed types for similar parameters. The diversity metrics separation and differences support strong artificial selection pressures during and after AD breed development, shaping the evolution of the breed and making them genomically distinct from similar breeds.

摘要

美国阿伯丁安格斯牛(AD)源自最初引入澳大利亚新南威尔士州特兰吉农业研究中心的阿伯丁安格斯牛群。尽管 AD 牛在育肥率方面受到了特定的选择压力,但它们的基因组仍未被充分描述。本研究的目的是利用全基因组 SNP 数据,对纯种和杂交 AD 牛与 7 种常见的美国肉牛品种进行遗传多样性和结构特征分析。共使用了 1140 头动物,包括 404 头纯种(=8 种)和 736 头杂交个体(=10 种)。采用了遗传多样性指标、分子方差分析和主成分判别分析。在不考虑连锁不平衡的情况下,标记影响了基本多样性参数的估计,尤其是对 AD 牛的影响。即便如此,种群内和种群间的估计将 AD 牛与其他纯种类型(例如,Latter 的成对 F 值范围为 0.1129 至 0.2209)区分开来,AD 牛的杂合度较低,等位基因丰富度也低于其他纯种类型。杂交 AD 影响的牛在类似参数方面介于其他杂交类型之间。多样性指标的分离和差异支持 AD 品种发展过程中以及之后人工选择压力的存在,塑造了品种的进化,并使它们在基因组上与相似品种明显不同。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/dad0a628a488/genes-14-01842-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/6f6a83d3e15a/genes-14-01842-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/01902fa66008/genes-14-01842-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/97113e7f3e04/genes-14-01842-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/90d19d99857b/genes-14-01842-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/a5f1f531a97a/genes-14-01842-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/97d4c71f2df0/genes-14-01842-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/e8fa09268d86/genes-14-01842-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/8c230b876be1/genes-14-01842-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/3c2d5a026efc/genes-14-01842-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/dad0a628a488/genes-14-01842-g010.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/6f6a83d3e15a/genes-14-01842-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/01902fa66008/genes-14-01842-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/97113e7f3e04/genes-14-01842-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/90d19d99857b/genes-14-01842-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/a5f1f531a97a/genes-14-01842-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/97d4c71f2df0/genes-14-01842-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/e8fa09268d86/genes-14-01842-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/8c230b876be1/genes-14-01842-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/3c2d5a026efc/genes-14-01842-g009.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b9ba/10606367/dad0a628a488/genes-14-01842-g010.jpg

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