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来自菌株B11的β-醚酶LigF的克隆、表达及生化特性分析

Cloning, expression, and biochemical characterization of β-etherase LigF from sp. B11.

作者信息

Robles-Machuca Marcela, Aviles-Mejía Lucero, Romero-Soto Itzel Celeste, Rodríguez Jorge A, Armenta-Pérez Vicente Paúl, Camacho-Ruiz María Angeles

机构信息

Tecnología de Alimentos, Secretaría de Investigación y Posgrado, Universidad Autónoma de Nayarit, Tepic, 63000, Nayarit, Mexico.

Laboratorio de Investigación en Biotecnología, Centro Universitario del Norte, Universidad de Guadalajara, Colotlán, 46200, Jalisco, Mexico.

出版信息

Heliyon. 2023 Oct 14;9(10):e21006. doi: 10.1016/j.heliyon.2023.e21006. eCollection 2023 Oct.

DOI:10.1016/j.heliyon.2023.e21006
PMID:37916079
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10616338/
Abstract

Lignin, a complex heteropolymer present in plant cell walls, is now recognized as a valuable renewable resource with potential applications in various industries. The lignin biorefinery concept, which aims to convert lignin into value-added products, has gained significant attention in recent years. β-etherases, enzymes that selectively cleave β--4 aryl ether bonds in lignin, have shown promise in lignin depolymerization. In this study, the β-etherase LigF from sp. B11 was cloned, expressed, purified, and biochemically characterized. The LigF-AB11 enzyme exhibited optimal activity at 32 °C and pH 8.5 when catalyzing the substrate PNP-AV. The enzyme displayed mesophilic behavior and demonstrated higher activity at moderate temperatures. Stability analysis revealed that LigF-AB11 was not thermostable, with a complete loss of activity at 60 °C within an hour. Moreover, LigF-AB11 exhibited excellent pH stability, retaining over 50 % of its activity after 1 h under pH conditions ranging from 3.0 to 11.0. Metal ions and surface impregnation agents were found to affect the enzyme's activity, highlighting the importance of considering these factors in enzymatic processes for lignin depolymerization. This study provides valuable insights into the biochemical properties of LigF-AB11 and contributes to the development of efficient enzymatic processes for lignin biorefineries. Further optimization and understanding of β-etherases will facilitate their practical application in the valorization of lignin.

摘要

木质素是一种存在于植物细胞壁中的复杂杂聚物,如今被认为是一种具有潜在应用价值的可再生资源,在各个行业都有潜在应用。旨在将木质素转化为增值产品的木质素生物精炼概念近年来受到了广泛关注。β-醚酶是一类能选择性切割木质素中β-4芳基醚键的酶,在木质素解聚方面显示出了潜力。在本研究中,克隆、表达、纯化并对来自菌株B11的β-醚酶LigF进行了生化特性分析。LigF-AB11酶在催化底物对硝基苯-香草醛(PNP-AV)时,在32℃和pH 8.5条件下表现出最佳活性。该酶表现出嗜温特性,在中等温度下活性更高。稳定性分析表明,LigF-AB11不耐热,在60℃下1小时内活性完全丧失。此外,LigF-AB11表现出优异的pH稳定性,在pH值为3.0至11.0的条件下处理1小时后仍保留超过50%的活性。发现金属离子和表面浸渍剂会影响该酶的活性,这突出了在木质素解聚酶促过程中考虑这些因素的重要性。本研究为LigF-AB11的生化特性提供了有价值的见解,并有助于开发高效的木质素生物精炼酶促工艺。对β-醚酶的进一步优化和了解将促进其在木质素增值利用中的实际应用。

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本文引用的文献

1
Enzymatic bioconversion process of lignin: mechanisms, reactions and kinetics.木质素的酶促生物转化过程:机制、反应和动力学。
Bioresour Technol. 2021 Nov;340:125655. doi: 10.1016/j.biortech.2021.125655. Epub 2021 Jul 26.
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Database Mining for Novel Bacterial β-Etherases, Glutathione-Dependent Lignin-Degrading Enzymes.
数据库挖掘新型细菌 β-醚酶、依赖谷胱甘肽的木质素降解酶。
Appl Environ Microbiol. 2020 Jan 7;86(2). doi: 10.1128/AEM.02026-19.
4
A field of dreams: Lignin valorization into chemicals, materials, fuels, and health-care products.梦想之地:木质素的增值转化为化学品、材料、燃料和医疗保健产品。
Biotechnol Adv. 2019 Nov 1;37(6):107360. doi: 10.1016/j.biotechadv.2019.02.016. Epub 2019 Apr 6.
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A heterodimeric glutathione -transferase that stereospecifically breaks lignin's β()-aryl ether bond reveals the diversity of bacterial β-etherases.一种立体选择性断裂木质素β()-芳基醚键的异二聚体谷胱甘肽转移酶揭示了细菌β-醚酶的多样性。
J Biol Chem. 2019 Feb 8;294(6):1877-1890. doi: 10.1074/jbc.RA118.006548. Epub 2018 Dec 12.
6
Complete Genome Sequence of Altererythrobacter sp. Strain B11, an Aromatic Monomer-Degrading Bacterium, Isolated from Deep-Sea Sediment under the Seabed off Kashima, Japan.从日本鹿岛近海海底深海沉积物中分离出的一株能降解芳香单体的细菌——交替赤杆菌属菌株B11的全基因组序列
Genome Announc. 2018 Mar 22;6(12):e00200-18. doi: 10.1128/genomeA.00200-18.
7
Some metals inhibit the glutathione S-transferase from Van Lake fish gills.一些金属会抑制凡湖鱼鳃中的谷胱甘肽S-转移酶。
J Biochem Mol Toxicol. 2017 Nov;31(11). doi: 10.1002/jbt.21967. Epub 2017 Jul 31.
8
Multi-step biocatalytic depolymerization of lignin.木质素的多步生物催化解聚
Appl Microbiol Biotechnol. 2017 Aug;101(15):6277-6287. doi: 10.1007/s00253-017-8360-z. Epub 2017 Jun 21.
9
Effect of sulfonated lignin on enzymatic activity of the ligninolytic enzymes Cα-dehydrogenase LigD and β-etherase LigF.磺化木质素对木质素分解酶Cα-脱氢酶LigD和β-醚酶LigF酶活性的影响。
Enzyme Microb Technol. 2016 Nov;93-94:59-69. doi: 10.1016/j.enzmictec.2016.07.008. Epub 2016 Jul 25.
10
Structural Basis of Stereospecificity in the Bacterial Enzymatic Cleavage of β-Aryl Ether Bonds in Lignin.细菌对木质素中β-芳基醚键进行酶促裂解时立体特异性的结构基础
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