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定量测定细菌共培养过程中的抗菌活性。

Quantitative Determination of Antibacterial Activity During Bacterial Coculture.

机构信息

Division of Molecular Microbiology, School of Life Sciences, University of Dundee, Dundee, UK.

出版信息

Methods Mol Biol. 2024;2715:593-600. doi: 10.1007/978-1-0716-3445-5_37.

DOI:10.1007/978-1-0716-3445-5_37
PMID:37930554
Abstract

Antibacterial activity assays are an important tool in the assessment of the ability of one bacterium to kill or inhibit the growth of another, for example, during the study of the Type VI secretion system (T6SS) and the antibacterial toxins it secretes. The method we describe here can detect the ability of a bacterial strain to kill or inhibit other bacterial cells in a contact-dependent manner when cocultured on an agar surface. It is particularly useful since it enumerates the recovery of viable target cells and thus enables quantification of the antibacterial activity. We provide a detailed description of how to measure the T6SS-dependent antibacterial activity of a bacterium such as Serratia marcescens against a competitor prokaryotic organism, Escherichia coli, and describe possible variations in the method to allow adaptation to other attacker and target organisms.

摘要

抗菌活性测定是评估一种细菌杀死或抑制另一种细菌生长能力的重要工具,例如在研究 VI 型分泌系统(T6SS)及其分泌的抗菌毒素时。我们在这里描述的方法可以在琼脂表面共培养时检测细菌菌株以接触依赖性方式杀死或抑制其他细菌细胞的能力。由于它可以计算出目标细胞的存活恢复数,因此特别有用,从而能够定量测定抗菌活性。我们详细描述了如何测量细菌(如粘质沙雷氏菌)对竞争原核生物(大肠杆菌)的 T6SS 依赖性抗菌活性,并描述了该方法的可能变化,以适应其他攻击和目标生物。

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Quantitative Determination of Antibacterial Activity During Bacterial Coculture.定量测定细菌共培养过程中的抗菌活性。
Methods Mol Biol. 2024;2715:593-600. doi: 10.1007/978-1-0716-3445-5_37.
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A Quorum Sensing-Regulated Type VI Secretion System Containing Multiple Nonredundant VgrG Proteins Is Required for Interbacterial Competition in Chromobacterium violaceum.群体感应调控的包含多种非冗余 VgrG 蛋白的 VI 型分泌系统是 Chromobacterium violaceum 种间竞争所必需的。
Microbiol Spectr. 2022 Aug 31;10(4):e0157622. doi: 10.1128/spectrum.01576-22. Epub 2022 Jul 25.
2
Activity, delivery, and diversity of Type VI secretion effectors.VI 型分泌系统效应器的活性、传递和多样性。
Mol Microbiol. 2021 Mar;115(3):383-394. doi: 10.1111/mmi.14648. Epub 2020 Dec 7.
3
A family of Type VI secretion system effector proteins that form ion-selective pores.一类形成离子选择性孔的 VI 型分泌系统效应蛋白家族。
Nat Commun. 2019 Dec 2;10(1):5484. doi: 10.1038/s41467-019-13439-0.
4
The Type VI secretion system: a versatile bacterial weapon.VI 型分泌系统:一种多功能的细菌武器。
Microbiology (Reading). 2019 May;165(5):503-515. doi: 10.1099/mic.0.000789. Epub 2019 Mar 20.
5
The type VI secretion system deploys antifungal effectors against microbial competitors.VI 型分泌系统会针对微生物竞争者部署抗真菌效应子。
Nat Microbiol. 2018 Aug;3(8):920-931. doi: 10.1038/s41564-018-0191-x. Epub 2018 Jul 23.
6
Intraspecies Competition in Serratia marcescens Is Mediated by Type VI-Secreted Rhs Effectors and a Conserved Effector-Associated Accessory Protein.粘质沙雷氏菌的种内竞争由VI型分泌的Rhs效应蛋白和一种保守的效应蛋白相关辅助蛋白介导。
J Bacteriol. 2015 Jul;197(14):2350-60. doi: 10.1128/JB.00199-15. Epub 2015 May 4.
7
Agrobacterium tumefaciens deploys a superfamily of type VI secretion DNase effectors as weapons for interbacterial competition in planta.根癌土壤杆菌利用VI型分泌DNA酶效应蛋白超家族作为在植物中进行细菌间竞争的武器。
Cell Host Microbe. 2014 Jul 9;16(1):94-104. doi: 10.1016/j.chom.2014.06.002. Epub 2014 Jun 26.
8
PAAR-repeat proteins sharpen and diversify the type VI secretion system spike.PAAR 重复蛋白使 VI 型分泌系统刺突变锋利并多样化。
Nature. 2013 Aug 15;500(7462):350-353. doi: 10.1038/nature12453. Epub 2013 Aug 7.
9
Proteomic identification of novel secreted antibacterial toxins of the Serratia marcescens type VI secretion system.志贺氏菌 VI 型分泌系统新型分泌性抗菌毒素的蛋白质组学鉴定
Mol Cell Proteomics. 2013 Oct;12(10):2735-49. doi: 10.1074/mcp.M113.030502. Epub 2013 Jul 9.
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Appl Environ Microbiol. 2013 Jan;79(1):32-8. doi: 10.1128/AEM.02504-12. Epub 2012 Oct 12.