Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science, Research School of Chemistry, Australian National University, Canberra 2601, Australian Capital Territory, Australia.
School of Chemistry and Molecular Bioscience, University of Wollongong, Wollongong 2500, New South Wales, Australia.
Biochemistry. 2023 Nov 21;62(22):3255-3264. doi: 10.1021/acs.biochem.3c00408. Epub 2023 Nov 7.
DFT calculations indicate that the F chemical shifts of aromatic rings containing single fluorine substituents are sensitive to the electric fields and electric field gradients at the position of the fluorine atom. The present work explores whether long-range structure restraints can be gained from changes in F chemical shifts following mutations of charged to uncharged residues. F chemical shifts of fluorotryptophan residues were measured in two different proteins, GB1 and the NT* domain, following mutations of single asparagine residues to aspartic acid. Four different versions of fluorotryptophan were investigated, including 4-, 5-, 6-, and 7-fluorotryptophan, which were simultaneously installed by cell-free protein synthesis using 4-, 5-, 6-, and 7-fluoroindole as precursors for the tryptophan synthase present in the S30 extract. For comparison, the H chemical shifts of the corresponding nonfluorinated protein mutants produced with C-labeled tryptophan were also measured. The results show that the F chemical shifts respond more sensitively to the charge mutations than the H chemical shifts in the nonfluorinated references, but the chemical shift changes were much smaller than predicted by DFT calculations of fluoroindoles in the electric field of a partial charge in vacuum, indicating comprehensive dielectric shielding by water and protein. No straightforward correlation with the location of the charge mutation could be established.
DFT 计算表明,含有单个氟取代基的芳环的 F 化学位移对氟原子位置的电场和电场梯度敏感。本工作探讨了在带电荷残基突变为不带电荷残基后,F 化学位移的变化是否可以提供长程结构约束。在两种不同的蛋白质 GB1 和 NT* 结构域中,通过突变单个天冬酰胺残基为天冬氨酸,测量了氟色氨酸残基的 F 化学位移。研究了四种不同的氟色氨酸版本,包括 4-、5-、6-和 7-氟色氨酸,这些氨基酸是通过无细胞蛋白质合成使用 4-、5-、6-和 7-氟吲哚作为色氨酸合酶的前体同时引入的,该酶存在于 S30 提取物中。为了比较,还测量了用 C 标记的色氨酸产生的相应非氟代蛋白突变体的 H 化学位移。结果表明,与非氟代参考物相比,F 化学位移对电荷突变的响应更敏感,但化学位移变化比真空中部分电荷电场中氟吲哚的 DFT 计算预测的要小得多,这表明水和蛋白质的综合介电屏蔽作用。电荷突变位置与化学位移变化之间没有直接的相关性。