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用于调控细胞周期的小分子降解剂的发现

Discovery of small molecule degraders for modulating cell cycle.

作者信息

Wang Liguo, Yang Zhouli, Li Guangchen, Liu Yongbo, Ai Chao, Rao Yu

机构信息

MOE Key Laboratory of Protein Sciences, School of Pharmaceutical Sciences, MOE Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology, Tsinghua University, Beijing, 100084, China.

Beijing Tsinghua Changgung Hospital, School of Clinical Medicine, Tsinghua University, Beijing, 102218, China.

出版信息

Front Med. 2023 Oct;17(5):823-854. doi: 10.1007/s11684-023-1027-5. Epub 2023 Nov 8.

DOI:10.1007/s11684-023-1027-5
PMID:37935945
Abstract

The cell cycle is a complex process that involves DNA replication, protein expression, and cell division. Dysregulation of the cell cycle is associated with various diseases. Cyclin-dependent kinases (CDKs) and their corresponding cyclins are major proteins that regulate the cell cycle. In contrast to inhibition, a new approach called proteolysis-targeting chimeras (PROTACs) and molecular glues can eliminate both enzymatic and scaffold functions of CDKs and cyclins, achieving targeted degradation. The field of PROTACs and molecular glues has developed rapidly in recent years. In this article, we aim to summarize the latest developments of CDKs and cyclin protein degraders. The selectivity, application, validation and the current state of each CDK degrader will be overviewed. Additionally, possible methods are discussed for the development of degraders for CDK members that still lack them. Overall, this article provides a comprehensive summary of the latest advancements in CDK and cyclin protein degraders, which will be helpful for researchers working on this topic.

摘要

细胞周期是一个复杂的过程,涉及DNA复制、蛋白质表达和细胞分裂。细胞周期失调与多种疾病相关。细胞周期蛋白依赖性激酶(CDK)及其相应的细胞周期蛋白是调节细胞周期的主要蛋白质。与抑制作用不同,一种名为蛋白酶靶向嵌合体(PROTAC)和分子胶的新方法可以消除CDK和细胞周期蛋白的酶促功能和支架功能,实现靶向降解。近年来,PROTAC和分子胶领域发展迅速。在本文中,我们旨在总结CDK和细胞周期蛋白降解剂的最新进展。将概述每种CDK降解剂的选择性、应用、验证情况及当前状态。此外,还讨论了为仍缺乏降解剂的CDK成员开发降解剂的可能方法。总体而言,本文全面总结了CDK和细胞周期蛋白降解剂的最新进展,这将有助于从事该主题研究的人员。

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Degradation-Based Protein Profiling: A Case Study of Celastrol.基于降解的蛋白质组学分析:以雷公藤红素为例。
Adv Sci (Weinh). 2024 Jul;11(25):e2308186. doi: 10.1002/advs.202308186. Epub 2024 Apr 25.

本文引用的文献

1
Development of PROTAC degrader probe of CDK4/6 based on DCAF16.基于DCAF16的CDK4/6 PROTAC降解剂探针的开发。
Bioorg Chem. 2023 Sep;138:106637. doi: 10.1016/j.bioorg.2023.106637. Epub 2023 May 27.
2
Piperlongumine conjugates induce targeted protein degradation.千里光生物碱缀合物诱导靶向蛋白降解。
Cell Chem Biol. 2023 Feb 16;30(2):203-213.e17. doi: 10.1016/j.chembiol.2023.01.004. Epub 2023 Feb 6.
3
DeepPROTACs is a deep learning-based targeted degradation predictor for PROTACs.DeepPROTACs 是一种基于深度学习的 PROTACs 靶向降解预测器。
Nat Commun. 2022 Nov 21;13(1):7133. doi: 10.1038/s41467-022-34807-3.
4
PROTAC-DB 2.0: an updated database of PROTACs.PROTAC-DB 2.0:一个更新的 PROTAC 数据库。
Nucleic Acids Res. 2023 Jan 6;51(D1):D1367-D1372. doi: 10.1093/nar/gkac946.
5
Chemistries of bifunctional PROTAC degraders.双功能 PROTAC 降解剂的化学。
Chem Soc Rev. 2022 Aug 15;51(16):7066-7114. doi: 10.1039/d2cs00220e.
6
CDK12 promotes tumorigenesis but induces vulnerability to therapies inhibiting folate one-carbon metabolism in breast cancer.CDK12 促进肿瘤发生,但易受抑制乳腺癌叶酸一碳代谢治疗的影响。
Nat Commun. 2022 May 12;13(1):2642. doi: 10.1038/s41467-022-30375-8.
7
Lessons Learned from Past Cyclin-Dependent Kinase Drug Discovery Efforts.从过去细胞周期蛋白依赖性激酶药物研发努力中吸取的经验教训。
J Med Chem. 2022 May 12;65(9):6356-6389. doi: 10.1021/acs.jmedchem.1c02190. Epub 2022 Mar 2.
8
Proteomic profiling reveals CDK6 upregulation as a targetable resistance mechanism for lenalidomide in multiple myeloma.蛋白质组学分析揭示 CDK6 上调是多发性骨髓瘤对来那度胺产生耐药性的一个可靶向的机制。
Nat Commun. 2022 Feb 23;13(1):1009. doi: 10.1038/s41467-022-28515-1.
9
PROTAC targeted protein degraders: the past is prologue.PROTAC 靶向蛋白降解剂:过去是序幕。
Nat Rev Drug Discov. 2022 Mar;21(3):181-200. doi: 10.1038/s41573-021-00371-6. Epub 2022 Jan 18.
10
Three decades of Cdk5.三十年的 CDK5。
J Biomed Sci. 2021 Nov 23;28(1):79. doi: 10.1186/s12929-021-00774-y.