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高度稳健的量子力学和伞状采样研究姜黄素和β-环糊精包合物。

Highly robust quantum mechanics and umbrella sampling studies on inclusion complexes of curcumin and β-cyclodextrin.

机构信息

Structural Bioinformatics Lab, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur, HP 176061, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.

Structural Bioinformatics Lab, Biotechnology Division, CSIR-Institute of Himalayan Bioresource Technology (CSIR-IHBT), Palampur, HP 176061, India; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad- 201002, India.

出版信息

Carbohydr Polym. 2024 Jan 1;323:121432. doi: 10.1016/j.carbpol.2023.121432. Epub 2023 Sep 26.

Abstract

The poor aqueous solubility of curcumin (CUR) obstructs its wide utilization in nutraceuticals, cosmetics, and pharmaceutical companies. This study is dedicated to investigate the stability of CUR inside the hydrophobic pocket of β-cyclodextrin (β-CD), hydroxypropyl-β-CD (HP-β-CD), and 2,6-Di-O-methyl-β-CD (DM-β-CD). Initially, molecular mechanics (MM) calculations and subsequently quantum mechanical (QM) calculations were performed on inclusion complexes to strengthen the MM results. We performed microsecond timescale MD simulations to observe the structural dynamics of CUR inside the cavity of CDs. We elucidated the most stable binding orientations of CUR inside the cavity of CDs based on binding free energy obtained from the Molecular Mechanics Poisson-Boltzmann Surface Area (MM-PBSA) and umbrella sampling simulations. Furthermore, the two-layered ONIOM (B3LYP/6-311+G(2d,p):PM7) method with CPCM implicit water model was used to derive the complete energetics and thermodynamics of inclusion complexes at 1:1 stoichiometry. Each inclusion reaction was exothermic and spontaneous. The chemical reactivity and kinetic stability of inclusion complexes were described by HOMO-LUMO molecular orbital energies. In conclusion, our studies revealed that HP-β-CD had the highest binding affinity for CUR with the most negative complexation energy (-6520.69 kJ/mol) and Gibb's free energy change (-6448.20 kJ/mol). The atomic-level investigation of noncovalent interactions between CUR and the hydroxypropyl groups in HP-β-CD/CUR complex may be helpful to drive new derivatives of HP-β-CD with better host capacity. The computational strategy adopted here might serve as a benchmark for increasing the solubility of numerous clinically significant molecules.

摘要

姜黄素(CUR)的水溶性差,阻碍了其在营养保健品、化妆品和制药公司中的广泛应用。本研究致力于研究 CUR 在β-环糊精(β-CD)、羟丙基-β-环糊精(HP-β-CD)和 2,6-二-O-甲基-β-环糊精(DM-β-CD)疏水口袋内的稳定性。首先,对包合物进行分子力学(MM)计算,随后进行量子力学(QM)计算,以增强 MM 结果。我们进行了微秒时间尺度的 MD 模拟,以观察 CUR 在 CD 腔体内的结构动力学。我们根据从分子力学泊松-玻尔兹曼表面面积(MM-PBSA)和伞形采样模拟中获得的结合自由能,阐明了 CUR 在 CD 腔体内的最稳定结合取向。此外,使用两层 ONIOM(B3LYP/6-311+G(2d,p):PM7)方法和 CPCM 隐式水模型,推导出 1:1 化学计量比的包合物的完整能量学和热力学。每个包合反应都是放热和自发的。通过 HOMO-LUMO 分子轨道能量描述了包合物的化学反应性和动力学稳定性。总之,我们的研究表明,HP-β-CD 与 CUR 具有最高的结合亲和力,具有最负的络合能(-6520.69 kJ/mol)和吉布斯自由能变化(-6448.20 kJ/mol)。在 HP-β-CD/CUR 复合物中,CUR 与羟丙基基团之间的非共价相互作用的原子水平研究可能有助于推动具有更好宿主能力的 HP-β-CD 的新衍生物的发展。这里采用的计算策略可能成为提高许多具有临床意义的分子溶解度的基准。

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