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与奥密克戎 SARS-CoV-2 变体相比,N-聚糖修饰对刺突蛋白表达、病毒感染力和中和敏感性的影响。

Effects of N-glycan modifications on spike expression, virus infectivity, and neutralization sensitivity in ancestral compared to Omicron SARS-CoV-2 variants.

机构信息

Division of Viral Products, Office of Vaccines Research and Review, Center for Biologics Evaluation and Research, Food and Drug Administration, Silver Spring Maryland, United States of America.

出版信息

PLoS Pathog. 2023 Nov 9;19(11):e1011788. doi: 10.1371/journal.ppat.1011788. eCollection 2023 Nov.

Abstract

The SARS-CoV-2 spike glycoprotein has 22 potential N-linked glycosylation sites per monomer that are highly conserved among diverse variants, but how individual glycans affect virus entry and neutralization of Omicron variants has not been extensively characterized. Here we compared the effects of specific glycan deletions or modifications in the Omicron BA.1 and D614G spikes on spike expression, processing, and incorporation into pseudoviruses, as well as on virus infectivity and neutralization by therapeutic antibodies. We found that loss of potential glycans at spike residues N717 and N801 each conferred a loss of pseudovirus infectivity for Omicron but not for D614G or Delta variants. This decrease in infectivity correlated with decreased spike processing and incorporation into Omicron pseudoviruses. Oligomannose-enriched Omicron pseudoviruses generated in GnTI- cells or in the presence of kifunensine were non-infectious, whereas D614G or Delta pseudoviruses generated under similar conditions remained infectious. Similarly, growth of live (authentic) SARS-CoV-2 in the presence of kifunensine resulted in a greater reduction of titers for the BA.1.1 variant than Delta or D614G variants relative to their respective, untreated controls. Finally, we found that loss of some N-glycans, including N343 and N234, increased the maximum percent neutralization by the class 3 S309 monoclonal antibody against D614G but not BA.1 variants, while these glycan deletions altered the neutralization potency of the class 1 COV2-2196 and Etesevimab monoclonal antibodies without affecting maximum percent neutralization. The maximum neutralization by some antibodies also varied with the glycan composition, with oligomannose-enriched pseudoviruses conferring the highest percent neutralization. These results highlight differences in the interactions between glycans and residues among SARS-CoV-2 variants that can affect spike expression, virus infectivity, and susceptibility of variants to antibody neutralization.

摘要

SARS-CoV-2 的刺突糖蛋白每个单体有 22 个潜在的 N-连接糖基化位点,这些位点在不同变体中高度保守,但单个糖基如何影响病毒进入和对奥密克戎变体的中和作用尚未得到广泛描述。在这里,我们比较了奥密克戎 BA.1 和 D614G 刺突中特定糖基缺失或修饰对刺突表达、加工和掺入假病毒以及病毒感染力和治疗性抗体中和的影响。我们发现,刺突残基 N717 和 N801 上潜在糖基的丧失都导致奥密克戎假病毒感染力丧失,但对 D614G 或德尔塔变体则不然。这种感染力的降低与刺突加工和掺入奥密克戎假病毒减少相关。在 GnTI-细胞中或在 kifunensine 存在的情况下产生的富含寡甘露糖的奥密克戎假病毒无感染力,而在类似条件下产生的 D614G 或德尔塔假病毒仍具有感染力。同样,在 kifunensine 存在的情况下,活(真实)SARS-CoV-2 的生长导致 BA.1.1 变体的滴度相对于其各自未经处理的对照物降低幅度大于德尔塔或 D614G 变体。最后,我们发现,一些 N-糖基的丧失,包括 N343 和 N234,增加了针对 D614G 的第 3 类 S309 单克隆抗体的最大百分比中和,但对 BA.1 变体则没有,而这些糖基缺失改变了第 1 类 COV2-2196 和 Etesevimab 单克隆抗体的中和效力,而不影响最大百分比中和。一些抗体的最大中和也随聚糖组成而变化,富含寡甘露糖的假病毒赋予最高的中和百分比。这些结果强调了 SARS-CoV-2 变体中聚糖和残基之间相互作用的差异,这些差异会影响刺突表达、病毒感染力和变体对抗体中和的敏感性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/259e/10662749/f618917074b0/ppat.1011788.g001.jpg

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