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通过转录组分析研究JLU460ET中常见和独特的睾酮及17β-雌二醇降解机制

Common and unique testosterone and 17 beta-estradiol degradation mechanisms in JLU460ET by transcriptome analysis.

作者信息

Wang Ze, Chen Mingming, Liu Na, Zhao Yongkang, Ru Jintao, Qin Chuanyu, Zhang Tingdi

机构信息

Key Laboratory of Groundwater Resources and Environment (Jilin University), Ministry of Education, Jilin Provincial Key Laboratory of Water Resources and Environment, College of New Energy and Environment, Jilin University, Changchun, Jilin, China.

Department of Ecology, College of Life Science and Technology, Jinan University, Guangzhou, Guangdong, China.

出版信息

Front Microbiol. 2023 Oct 26;14:1238855. doi: 10.3389/fmicb.2023.1238855. eCollection 2023.

Abstract

Strain JLU460ET was isolated for testosterone and 17 beta-estradiol degradation by our group. In this study, strain JLU460ET was induced by testosterone and 17 beta-estradiol and then subjected to transcriptome analysis. There were 2,047 upregulated genes after 3 h of testosterone induction, 2,040 upregulated genes after 13 h of testosterone induction, 2,078 upregulated genes after 3 h of 17 beta-estradiol induction, and 2,095 upregulated genes after 13 h of 17 beta-estradiol induction. Significantly upregulated genes were mainly involved in steroid and aromatic compound degradation. A 100 kb steroid-degrading gene cluster was found by transcriptome analysis, which included 92 annotated genes and 58 novel genes. Among them, MucB/RseB and Fiu are secretory proteins for sensing substrates in the environment. MFS-1 and TonB are transporters of testosterone and 17 beta-estradiol. Ring-cleavage enzymes and beta-oxidation enzymes are important for degradation. The genes upregulated by both substrates were almost the same, but the degree of induction by testosterone was higher than that by 17 beta-estradiol. Nine upregulated genes were selected for verification by quantitative real-time polymerase chain reaction (qRT-PCR). The qRT-PCR results were consistent with the transcriptome sequencing results. In this study, the common and unique metabolic mechanisms of testosterone and 17 beta-estradiol were compared by transcriptome analysis in JLU460ET for the first time.

摘要

JLU460ET菌株是由我们团队分离得到的,用于降解睾酮和17β-雌二醇。在本研究中,JLU460ET菌株经睾酮和17β-雌二醇诱导后进行转录组分析。睾酮诱导3小时后有2047个基因上调,睾酮诱导13小时后有2040个基因上调,17β-雌二醇诱导3小时后有2078个基因上调,17β-雌二醇诱导13小时后有2095个基因上调。显著上调的基因主要参与类固醇和芳香族化合物的降解。通过转录组分析发现了一个100 kb的类固醇降解基因簇,其中包括92个注释基因和58个新基因。其中,MucB/RseB和Fiu是用于感知环境中底物的分泌蛋白。MFS-1和TonB是睾酮和17β-雌二醇的转运蛋白。环裂解酶和β-氧化酶对降解很重要。两种底物上调的基因几乎相同,但睾酮的诱导程度高于17β-雌二醇。选择9个上调基因通过定量实时聚合酶链反应(qRT-PCR)进行验证。qRT-PCR结果与转录组测序结果一致。本研究首次通过转录组分析比较了JLU460ET中睾酮和17β-雌二醇的共同和独特代谢机制。

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