Unit of Enantioselective Chromatography and Molecular Recognition, Institute of Biomolecular Chemistry ICB, Secondary Branch of Sassari, CNR, Traversa La Crucca 3, Regione Baldinca, Li Punti, 07100 Sassari, Italy.
Molecules. 2023 Nov 3;28(21):7419. doi: 10.3390/molecules28217419.
In the last few decades, theoretical and technical advancements in computer facilities and computational techniques have made molecular modeling a useful tool in liquid-phase enantioseparation science for exploring enantioselective recognition mechanisms underlying enantioseparations and for identifying selector-analyte noncovalent interactions that contribute to binding and recognition. Because of the dynamic nature of the chromatographic process, molecular dynamics (MD) simulations are particularly versatile in the visualization of the three-dimensional structure of analytes and selectors and in the unravelling of mechanisms at molecular levels. In this context, MD was also used to explore enantioseparation processes promoted by amylose and cellulose-based selectors, the most popular chiral selectors for liquid-phase enantioselective chromatography. This review presents a systematic analysis of the literature published in this field, with the aim of providing the reader with a comprehensive picture about the state of the art and what is still missing for modeling cellulose benzoates and the phenylcarbamates of amylose and cellulose and related enantioseparations with MD. Furthermore, advancements and outlooks, as well as drawbacks and pitfalls still affecting the applicability of MD in this field, are also discussed. The importance of integrating theoretical and experimental approaches is highlighted as an essential strategy for profiling mechanisms and noncovalent interaction patterns.
在过去几十年中,计算机设备和计算技术的理论和技术进步使分子建模成为液相对映体分离科学中的有用工具,可用于探索对映体分离所基于的对映选择性识别机制,并用于识别有助于结合和识别的选择剂-分析物非共价相互作用。由于色谱过程的动态性质,分子动力学(MD)模拟在可视化分析物和选择剂的三维结构以及揭示分子水平上的机制方面特别灵活。在这种情况下,MD 还用于探索由直链淀粉和纤维素基选择剂促进的对映体分离过程,直链淀粉和纤维素基选择剂是液相对映选择性色谱法中最受欢迎的手性选择剂。本综述对该领域发表的文献进行了系统分析,旨在为读者提供有关该领域最新技术和仍需解决的问题的全面概述,用于对纤维素苯甲酸酯和直链淀粉和纤维素的苯甲酰胺以及相关对映体分离进行 MD 建模。此外,还讨论了该领域 MD 的应用仍存在的进展和展望、缺点和陷阱。强调了将理论和实验方法相结合的重要性,这是分析机制和非共价相互作用模式的重要策略。