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生物信息学分析揭示了心房颤动与牙周炎之间潜在的共同基因和免疫特征。

Bioinformatics analysis reveals the potential common genes and immune characteristics between atrial fibrillation and periodontitis.

作者信息

Xiang Jie, Cao Jiaru, Shen Jun, Wang Xiaoyan, Liang Junqing, Li Xinshang, Zhang Ling, Tang Baopeng

机构信息

Xinjiang Key Laboratory of Cardiac Electrophysiology and Remodeling, The First Affiliated Hospital of Xinjiang Medical University, Xinjiang, Urumqi, China.

Department of Pacing and Electrophysiology, The First Affiliated Hospital of Xinjiang Medical University, Xinjiang, Urumqi, China.

出版信息

J Periodontal Res. 2024 Feb;59(1):104-118. doi: 10.1111/jre.13192. Epub 2023 Nov 16.

Abstract

BACKGROUND AND OBJECTIVE

Atrial fibrillation (AF) and periodontitis, both classified under chronic inflammatory diseases, share common etiologies, including genetic factors and immune pathways. However, the exact mechanisms are still poorly understood. This study aimed to explore the potential common genes and immune characteristics between AF and periodontitis.

METHODS

Gene expression datasets for AF and periodontitis were downloaded from the Gene Expression Omnibus (GEO) database. Differential expression analysis was used to identify common genes in the training set. Functional analyses, including Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment, were conducted to elucidate the underlying mechanisms. Hub genes were further screened based on expression levels, receiver operating characteristic (ROC) curves, and least absolute shrinkage and selection operator (LASSO) regression. Then, based on the expression levels and ROC values of the hub genes in the validation set, the target genes were identified. Finally, immune cell infiltration analysis was performed on the AF and periodontitis datasets in the training set using the "CIBERSORT" R package. The relationships between target genes, infiltrating immune cells, and inflammatory factors were also investigated. In addition, AF susceptibility, atrial fibrosis, inflammatory infiltration, and RGS1 protein expression in rat models of periodontitis were assessed through in vivo electrophysiology experiments, Masson's trichrome staining, hematoxylin-eosin staining, immunohistochemistry, and western blotting, respectively.

RESULTS

A total of 21 common genes were identified between AF and periodontitis among the differentially expressed genes. After evaluating gene expression levels, ROC curves, and LASSO analysis, four significant genes between AF and periodontitis were identified, namely regulator of G-protein signaling 1 (RGS1), annexin A6 (ANXA6), solute carrier family 27 member 6 (SLC27A6), and ficolin 1 (FCN1). Further validation confirmed that RGS1 was the optimal shared target gene for AF and periodontitis. Immune cell infiltration analysis revealed that neutrophils and T cells play an important role in the pathogenesis of both diseases. RGS1 showed a significant positive correlation with activated memory CD4 T cells and gamma-delta T cells and a negative correlation with CD8 T cells and regulatory T cells in both training sets. Moreover, RGS1 was positively correlated with classical pro-inflammatory cytokines IL1β and IL6. In periodontitis rat models, AF susceptibility, atrial fibrosis, and inflammatory infiltration were significantly increased, and RGS1 expression in the atrial tissue was upregulated.

CONCLUSION

A common gene between AF and periodontitis, RGS1 appears central in linking the two conditions. Immune and inflammatory responses may underlie the interaction between AF and periodontitis.

摘要

背景与目的

心房颤动(AF)和牙周炎均归类于慢性炎症性疾病,具有包括遗传因素和免疫途径在内的共同病因。然而,确切机制仍知之甚少。本研究旨在探讨AF与牙周炎之间潜在的共同基因及免疫特征。

方法

从基因表达综合数据库(GEO)下载AF和牙周炎的基因表达数据集。采用差异表达分析在训练集中鉴定共同基因。进行功能分析,包括基因本体(GO)和京都基因与基因组百科全书(KEGG)通路富集分析,以阐明潜在机制。基于表达水平、受试者工作特征(ROC)曲线和最小绝对收缩和选择算子(LASSO)回归进一步筛选枢纽基因。然后,根据验证集中枢纽基因的表达水平和ROC值鉴定目标基因。最后,使用“CIBERSORT”R包对训练集中的AF和牙周炎数据集进行免疫细胞浸润分析。还研究了目标基因、浸润免疫细胞和炎症因子之间的关系。此外,分别通过体内电生理实验、Masson三色染色、苏木精-伊红染色、免疫组织化学和蛋白质免疫印迹法评估牙周炎大鼠模型中的AF易感性、心房纤维化、炎症浸润和RGS1蛋白表达。

结果

在差异表达基因中,共鉴定出21个AF与牙周炎之间的共同基因。在评估基因表达水平、ROC曲线和LASSO分析后,鉴定出AF与牙周炎之间的4个重要基因,即G蛋白信号调节因子1(RGS1)、膜联蛋白A6(ANXA6)、溶质载体家族27成员6(SLC27A6)和纤维胶凝蛋白1(FCN1)。进一步验证证实RGS1是AF和牙周炎的最佳共同目标基因。免疫细胞浸润分析显示,中性粒细胞和T细胞在两种疾病的发病机制中起重要作用。在两个训练集中,RGS1与活化记忆CD4 T细胞和γδ T细胞呈显著正相关,与CD8 T细胞和调节性T细胞呈负相关。此外,RGS1与经典促炎细胞因子IL1β和IL6呈正相关。在牙周炎大鼠模型中,AF易感性、心房纤维化和炎症浸润显著增加,心房组织中RGS1表达上调。

结论

AF和牙周炎之间的一个共同基因RGS1似乎在连接这两种疾病中起核心作用。免疫和炎症反应可能是AF与牙周炎相互作用的基础。

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