Bioengineering Graduate Program, The University of Kansas, Lawrence, KS, 66045, USA.
Vaccine Research Center, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, 20814, USA.
Nat Commun. 2023 Nov 21;14(1):7593. doi: 10.1038/s41467-023-42098-5.
The HIV-1 fusion peptide (FP) represents a promising vaccine target, but global FP sequence diversity among circulating strains has limited anti-FP antibodies to ~60% neutralization breadth. Here we evolve the FP-targeting antibody VRC34.01 in vitro to enhance FP-neutralization using site saturation mutagenesis and yeast display. Successive rounds of directed evolution by iterative selection of antibodies for binding to resistant HIV-1 strains establish a variant, VRC34.01_mm28, as a best-in-class antibody with 10-fold enhanced potency compared to the template antibody and ~80% breadth on a cross-clade 208-strain neutralization panel. Structural analyses demonstrate that the improved paratope expands the FP binding groove to accommodate diverse FP sequences of different lengths while also recognizing the HIV-1 Env backbone. These data reveal critical antibody features for enhanced neutralization breadth and potency against the FP site of vulnerability and accelerate clinical development of broad HIV-1 FP-targeting vaccines and therapeutics.
HIV-1 融合肽(FP)是一种很有前途的疫苗靶点,但循环毒株之间的全球 FP 序列多样性限制了抗 FP 抗体的中和广度约为 60%。在这里,我们通过体外定点饱和突变和酵母展示来进化靶向 FP 的抗体 VRC34.01,以增强 FP 的中和能力。通过对结合耐药 HIV-1 株的抗体进行反复选择,进行连续几轮的定向进化,建立了一种变体 VRC34.01_mm28,作为一种同类最佳的抗体,与模板抗体相比,其效力提高了 10 倍,在跨 208 株的中和面板上的广谱性约为 80%。结构分析表明,改进的互补决定区扩展了 FP 结合槽,以容纳不同长度的不同 FP 序列,同时也识别 HIV-1 Env 骨架。这些数据揭示了针对 FP 易损部位增强中和广度和效力的关键抗体特征,并加速了广谱 HIV-1 FP 靶向疫苗和疗法的临床开发。