Woińska Magdalena, Hoser Anna A, Chodkiewicz Michał L, Woźniak Krzysztof
Biological and Chemical Research Centre, Chemistry Department, University of Warsaw, Żwirki i Wigury 101, Warsaw 02-089, Poland.
IUCrJ. 2024 Jan 1;11(Pt 1):45-56. doi: 10.1107/S205225252300951X.
Hirshfeld atom refinement (HAR) is a method which enables the user to obtain more accurate positions of hydrogen atoms bonded to light chemical elements using X-ray data. When data quality permits, this method can be extended to hydrogen-bonded transition metals (TMs), as in hydride complexes. However, addressing hydrogen thermal motions with HAR, particularly in TM hydrides, presents a challenge. At the same time, proper description of thermal vibrations can be vital for determining hydrogen positions correctly. In this study, we employ tools such as SHADE3 and Normal Mode Refinement (NoMoRe) to estimate anisotropic displacement parameters (ADPs) for hydrogen atoms during HAR and IAM refinements performed for seven structures of TM (Fe, Ni, Cr, Nb, Rh and Os) and metalloid (Sb) hydride complexes for which both the neutron and the X-ray structures have been determined. A direct comparison between neutron and HAR/SHADE3/NoMoRe ADPs reveals that the similarity between neutron hydrogen ADPs and those estimated with NoMoRe or SHADE3 is significantly higher than when hydrogen ADPs are refined with HAR. Regarding TM-H bond lengths, traditional HAR exhibits a slight advantage over the other methods. However, combining NoMoRe/SHADE3 with HAR results in a minor decrease in agreement with neutron TM-H bond lengths. For the Cr complex, for which high-resolution X-ray data were collected, an investigation of resolution-related effects was possible.
赫希菲尔德原子精修(HAR)是一种方法,它能让用户利用X射线数据获得与轻化学元素相连的氢原子更精确的位置。当数据质量允许时,这种方法可以扩展到氢键合的过渡金属(TM),如在氢化物配合物中。然而,用HAR处理氢的热运动,特别是在TM氢化物中,是一项挑战。同时,正确描述热振动对于正确确定氢的位置可能至关重要。在本研究中,我们使用诸如SHADE3和简正模式精修(NoMoRe)等工具,在对七种TM(铁、镍、铬、铌、铑和锇)和类金属(锑)氢化物配合物结构进行HAR和独立原子模型(IAM)精修期间,估计氢原子的各向异性位移参数(ADP),这些配合物的中子和X射线结构均已确定。中子与HAR/SHADE3/NoMoRe ADP之间的直接比较表明,中子氢ADP与用NoMoRe或SHADE3估计的ADP之间的相似性明显高于用HAR精修氢ADP时的相似性。关于TM-H键长,传统的HAR比其他方法略有优势。然而,将NoMoRe/SHADE3与HAR结合使用会导致与中子TM-H键长的一致性略有下降。对于收集了高分辨率X射线数据的铬配合物,可以研究分辨率相关的影响。