Kleemiss Florian, Dolomanov Oleg V, Bodensteiner Michael, Peyerimhoff Norbert, Midgley Laura, Bourhis Luc J, Genoni Alessandro, Malaspina Lorraine A, Jayatilaka Dylan, Spencer John L, White Fraser, Grundkötter-Stock Bernhard, Steinhauer Simon, Lentz Dieter, Puschmann Horst, Grabowsky Simon
Universität Bern, Departement für Chemie und Biochemie Freiestrasse 3 3012 Bern Switzerland
OlexSys Ltd, Durham University South Road Durham DH1 3LE UK
Chem Sci. 2020 Nov 9;12(5):1675-1692. doi: 10.1039/d0sc05526c.
The relationship between the structure and the properties of a drug or material is a key concept of chemistry. Knowledge of the three-dimensional structure is considered to be of such importance that almost every report of a new chemical compound is accompanied by an X-ray crystal structure - at least since the 1970s when diffraction equipment became widely available. Crystallographic software of that time was restricted to very limited computing power, and therefore drastic simplifications had to be made. It is these simplifications that make the determination of the correct structure, especially when it comes to hydrogen atoms, virtually impossible. We have devised a robust and fast system where modern chemical structure models replace the old assumptions, leading to correct structures from the model refinement against standard in-house diffraction data using no more than widely available software and desktop computing power. We call this system (Non-Spherical Atoms in Olex2). We explain the theoretical background of this technique and demonstrate the far-reaching effects that the improved structure quality that is now routinely available can have on the interpretation of chemical problems exemplified by five selected examples.
药物或材料的结构与性质之间的关系是化学的一个关键概念。三维结构的知识被认为非常重要,以至于几乎每一篇关于新化合物的报告都附有X射线晶体结构——至少自20世纪70年代衍射设备广泛使用以来是这样。当时的晶体学软件计算能力非常有限,因此不得不进行大幅简化。正是这些简化使得确定正确的结构几乎不可能,尤其是在涉及氢原子时。我们设计了一个强大且快速的系统,其中现代化学结构模型取代了旧的假设,通过使用仅广泛可用的软件和桌面计算能力,针对标准的内部衍射数据进行模型精修,从而得到正确的结构。我们将这个系统称为(Olex2中的非球形原子)。我们解释了该技术的理论背景,并通过五个选定的例子展示了现在常规可获得的改进结构质量对化学问题解释可能产生的深远影响。