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大口黑鲈()肝脏转录组比较分析揭示了其对高温的响应机制。

Comparative Transcriptomic Analysis of Largemouth Bass () Livers Reveals Response Mechanisms to High Temperatures.

机构信息

Zhejiang Fisheries Technical Extension Center, Hangzhou 310023, China.

Key Laboratory of Vector Biology and Pathogen Control of Zhejiang Province, College of Life Sciences, Huzhou University, Huzhou 313000, China.

出版信息

Genes (Basel). 2023 Nov 17;14(11):2096. doi: 10.3390/genes14112096.

Abstract

High temperatures are considered one of the most significant limitations to subtropical fishery production. Largemouth bass () is an economically important freshwater species grown in subtropical areas, which are extremely sensitive to heat stress (HS). However, comprehensive transcriptomic data for the livers of largemouth bass in response to HS are still lacking. In this study, a comparative transcriptomic analysis was performed to investigate the gene expression profiles of the livers of largemouth bass under HS treatment. As a result, 6114 significantly differentially expressed genes (DEGs), which included 2645 up-regulated and 3469 down-regulated genes, were identified in response to HS. Bioinformatics analyses demonstrated that the 'ECM-receptor interaction' pathway was one of the most dramatically changed pathways in response to HS, and eight DEGs assigned to this pathway were taken as hub genes. Furthermore, the expression of these eight hub genes was determined by quantitative reverse transcription PCR, and all of them showed a significant change at the transcriptional level, suggesting a crucial role of the 'ECM-receptor interaction' pathway in the response of largemouth bass to HS. These findings may improve our understanding of the molecular mechanisms underlying the response of largemouth bass to HS.

摘要

高温被认为是亚热带渔业生产的最主要限制因素之一。大口黑鲈(Micropterus salmoides)是一种经济上重要的淡水养殖物种,生长在亚热带地区,对热应激(HS)极为敏感。然而,关于大口黑鲈肝脏对 HS 响应的综合转录组数据仍然缺乏。在这项研究中,进行了比较转录组分析,以研究 HS 处理下大口黑鲈肝脏的基因表达谱。结果,鉴定出 6114 个显著差异表达基因(DEGs),其中包括 2645 个上调和 3469 个下调基因。生物信息学分析表明,“ECM-受体相互作用”途径是对 HS 响应变化最显著的途径之一,该途径中的 8 个 DEGs 被视为枢纽基因。此外,通过定量反转录 PCR 确定了这 8 个枢纽基因的表达情况,它们在转录水平上均显示出显著变化,表明“ECM-受体相互作用”途径在大口黑鲈对 HS 的响应中起着关键作用。这些发现可能有助于我们理解大口黑鲈对 HS 响应的分子机制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c7a4/10671503/145d3653bfcf/genes-14-02096-g001.jpg

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