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spp. 蛋白质组学的进展与挑战。

Progresses and challenges in spp. proteomics.

机构信息

Department of Infectious, Tropical Diseases and Microbiology, IRCCS Sacro Cuore Don Calabria Hospital, 37024 Negrar di Valpolicella (Verona), Italy.

Department of Translational Medicine, University of Piemonte Orientale, 28100 Novara, Italy.

出版信息

Philos Trans R Soc Lond B Biol Sci. 2024 Jan 15;379(1894):20220447. doi: 10.1098/rstb.2022.0447. Epub 2023 Nov 27.

DOI:10.1098/rstb.2022.0447
PMID:38008115
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10676815/
Abstract

The availability of high-quality data of helminth genomes provided over the past two decades has supported and accelerated large-scale 'omics studies and, consequently, the achievement of a more in-depth molecular characterization of a number of pathogens. This has also involved spp. and since their genome was made available transcriptomics has been rather frequently applied to investigate gene expression regulation across their life cycle. proteomics characterization has instead been somehow neglected, with only a few reports performing high-throughput or targeted analyses associated with protein identification by tandem mass spectrometry. Such investigations are however necessary in order to discern important aspects associated with human strongyloidiasis, including understanding parasite biology and the mechanisms of host-parasite interaction, but also to identify novel diagnostic and therapeutic targets. In this review article, we will give an overview of the published proteomics studies investigating strongyloidiasis at different levels, spanning from the characterization of the somatic proteome and excretory/secretory products of different parasite stages to the investigation of potentially immunogenic proteins. Moreover, in the effort to try to start filling the current gap in host-proteomics, we will also present the first serum proteomics analysis in patients suffering from human strongyloidiasis. This article is part of the Theo Murphy meeting issue ': omics to worm-free populations'.

摘要

过去二十年中,高质量的寄生虫基因组数据的可用性支持并加速了大规模的“组学”研究,从而更深入地对许多病原体进行了分子特征分析。这也涉及到了 属种,并且自从它们的基因组可用以来,转录组学已经相当频繁地应用于研究其整个生命周期中的基因表达调控。然而,寄生虫蛋白质组学的特征分析在某种程度上被忽视了,只有少数报道通过串联质谱进行了高通量或靶向分析,以鉴定蛋白质。这些研究对于识别与人类旋毛虫病相关的重要方面是必要的,包括了解寄生虫生物学和宿主-寄生虫相互作用的机制,以及鉴定新的诊断和治疗靶点。在这篇综述文章中,我们将概述不同水平上已发表的旋毛虫病蛋白质组学研究,涵盖了从不同寄生虫阶段的体细胞蛋白质组和排泄/分泌产物的特征分析到潜在免疫原性蛋白质的研究。此外,为了努力尝试填补当前宿主蛋白质组学的空白,我们还将介绍首例人类旋毛虫病患者的血清蛋白质组学分析。本文是 Theo Murphy 会议议题“从组学到无寄生虫人群”的一部分。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8242/10676815/c4d2176c5822/rstb20220447f01b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8242/10676815/c6a4e0c33fea/rstb20220447f01a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8242/10676815/c4d2176c5822/rstb20220447f01b.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8242/10676815/c6a4e0c33fea/rstb20220447f01a.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8242/10676815/c4d2176c5822/rstb20220447f01b.jpg

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Special considerations for studies of extracellular vesicles from parasitic helminths: A community-led roadmap to increase rigour and reproducibility.寄生虫蠕虫细胞外囊泡研究的特殊考虑因素:提高严谨性和可重复性的社区主导路线图。
J Extracell Vesicles. 2023 Jan;12(1):e12298. doi: 10.1002/jev2.12298.
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The Strongyloides bioassay toolbox: A unique opportunity to accelerate functional biology for nematode parasites.
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Mol Biochem Parasitol. 2022 Nov;252:111526. doi: 10.1016/j.molbiopara.2022.111526. Epub 2022 Oct 12.
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Proteomics coupled with in vitro model to study the early crosstalk occurring between newly excysted juveniles of Fasciola hepatica and host intestinal cells.蛋白质组学与体外模型相结合,研究刚从囊蚴中孵出的肝片形吸虫幼虫与宿主肠细胞之间早期的串扰。
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