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PixD 光感受器中不同构象之间的电荷分离能的差异。

Difference in the Charge-Separation Energetics between Distinct Conformers in the PixD Photoreceptor.

机构信息

Research Center for Advanced Science and Technology, The University of Tokyo, 4-6-1 Komaba, Meguro-ku, Tokyo 153-8904, Japan.

Department of Applied Chemistry, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-8654, Japan.

出版信息

J Phys Chem B. 2023 Dec 7;127(48):10351-10359. doi: 10.1021/acs.jpcb.3c06483. Epub 2023 Nov 28.

Abstract

Blue light using flavin (BLUF) domain proteins are photoreceptors in various organisms. The PixD BLUF domain can adopt two conformations, W91 and W91, with Trp91 either proximal or distal to flavin (FMN). Using a quantum mechanical/molecular mechanical/polarizable continuum model approach, the energetics of charge-separated and biradical states in the two conformations were investigated. In the W91 conformation, the charge-separated state (FMN) is more stable than the photoexcited state (FMN*), whereas it is less stable due to an electrostatic repulsive interaction with the Ser28 side chain in the W91 conformation. This leads to a lower activation energy for the charge separation in the W91 conformation, resulting in a faster charge separation compared to that in the W91 conformation. In the W91 conformation, the radical state (FMNH) is more stable than FMN and forms from FMN, leading to reorientation of the Gln50 side chain adjacent to FMN and formation of a hydrogen bond between Gln50 and FMN. Subsequently, a signaling state forms through charge recombination. In contrast, in the W91 conformation, FMN cannot proceed further, returning to the dark-adapted state, as FMNH is less stable. Thus, formation of the signaling state exclusively occurs in the W91 conformation.

摘要

蓝光利用黄素(BLUF)结构域蛋白是各种生物中的光感受器。PixD BLUF 结构域可以采用两种构象,W91 和 W91,色氨酸 91 要么靠近黄素(FMN),要么远离黄素。使用量子力学/分子力学/极化连续体模型方法,研究了两种构象中电荷分离和双自由基态的能量。在 W91 构象中,电荷分离态(FMN)比光激发态(FMN*)更稳定,而在 W91 构象中,由于与 Ser28 侧链的静电排斥相互作用,其稳定性较低。这导致 W91 构象中电荷分离的活化能更低,从而导致电荷分离速度比 W91 构象更快。在 W91 构象中,自由基态(FMNH)比 FMN 更稳定,并从 FMN 形成,导致与 FMN 相邻的 Gln50 侧链重新定向,并在 Gln50 和 FMN 之间形成氢键。随后,通过电荷复合形成信号态。相比之下,在 W91 构象中,由于 FMNH 不太稳定,FMN 无法进一步进行,返回到暗适应状态。因此,信号态的形成仅发生在 W91 构象中。

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