Magri Meryam, Bouricha El Mehdi, Hakmi Mohammed, Jaoudi Rachid El, Belyamani Lahcen, Ibrahimi Azeddine
Medical Biotechnology Laboratory (MedBiotech), Rabat Medical & Pharmacy School, Mohammed V University in Rabat, Rabat, Morocco.
Mohammed VI Center for Research & Innovation, Rabat, Morocco.
Bioinform Biol Insights. 2023 Nov 20;17:11779322231212755. doi: 10.1177/11779322231212755. eCollection 2023.
is a major cause of nosocomial infections and is often associated with biofilm-mediated antibiotic resistance. The LasR protein is a key component of the quorum system in , allowing it to regulate its biofilm-induced pathogenicity. When the bacterial population reaches a sufficient density, the accumulation of N-(3-oxododecanoyl) acyl homoserine lactone (3O-C12-HSL) leads to the activation of the LasR receptor, which then acts as a transcriptional activator of target genes involved in biofilm formation and virulence, thereby increasing the bacteria's antibiotic resistance and enhancing its virulence. In this study, we performed a structure-based virtual screening of a natural food database of 10 997 compounds against the crystal structure of the ligand-binding domain of the LasR receptor (PDB ID: 3IX4). This allowed us to identify four molecules, namely ZINC000001580795, ZINC000014819517, ZINC000014708292, and ZINC000004098719, that exhibited a favorable binding mode and docking scores greater than -13 kcal/mol. Furthermore, the molecular dynamics simulation showed that these four molecules formed stable complexes with LasR during the 150-ns molecular dynamics (MD) simulation, indicating their potential for use as inhibitors of the LasR receptor in . However, further experimental validation is needed to confirm their activity.
是医院感染的主要原因,并且常常与生物膜介导的抗生素耐药性相关。LasR蛋白是[细菌名称]群体感应系统的关键组成部分,使其能够调节其生物膜诱导的致病性。当细菌群体达到足够密度时,N-(3-氧代十二烷酰基)酰基高丝氨酸内酯(3O-C12-HSL)的积累导致LasR受体激活,然后LasR作为参与生物膜形成和毒力的靶基因的转录激活因子,从而增加细菌的抗生素耐药性并增强其毒力。在本研究中,我们针对LasR受体配体结合结构域的晶体结构(蛋白质数据银行ID:3IX4)对10997种化合物的天然食品数据库进行了基于结构的虚拟筛选。这使我们能够鉴定出四个分子,即ZINC000001580795、ZINC000014819517、ZINC000014708292和ZINC000004098719,它们表现出良好的结合模式且对接分数大于-13千卡/摩尔。此外,分子动力学模拟表明,在150纳秒的分子动力学(MD)模拟过程中,这四个分子与LasR形成了稳定的复合物,表明它们有潜力用作[细菌名称]中LasR受体的抑制剂。然而,需要进一步的实验验证来确认它们的活性。