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从苹果病原体中鉴定和动力学表征 AmsI 蛋白酪氨酸磷酸酶的一种新的潜在抑制剂。

Determination and Kinetic Characterization of a New Potential Inhibitor for AmsI Protein Tyrosine Phosphatase from the Apple Pathogen .

机构信息

Laboratory of Bioinorganic Chemistry, Department of Pharmacy and Biotechnology, University of Bologna, 40126 Bologna, Italy.

Bioorganic Chemistry and Bio-Crystallography Laboratory (B2Cl), Faculty of Agricultural, Environmental and Food Sciences, Free University of Bolzano, 39100 Bolzano, Italy.

出版信息

Molecules. 2023 Nov 25;28(23):7774. doi: 10.3390/molecules28237774.

Abstract

is a Gram-negative bacterium, responsible for the fire blight disease in Rosaceae plants. Its virulence is correlated with the production of an exopolysaccharide (EPS) called amylovoran, which protects the bacterium from the surrounding environment and helps its diffusion inside the host. Amylovoran biosynthesis relies on the expression of twelve genes clustered in the operon. One of these genes, , encodes for a Low Molecular Weight Protein Tyrosine Phosphatase (LMW-PTP) called AmsI, which plays a key role in the regulation of the EPS production pathway. For this reason, AmsI was chosen in this work as a target for the development of new antibacterial agents against . To achieve this aim, a set of programs (DOCK6, OpenEye FRED) was selected to perform a virtual screening using a database of ca. 700 molecules. The six best-scoring compounds identified were tested in in vitro assays. A complete inhibition kinetic characterization carried out on the most promising molecule (n-Heptyl β-D-glucopyranoside, N7G) showed an inhibition constant of 7.8 ± 0.6 µM. This study represents an initial step towards the development of new AmsI inhibitors able to act as antibacterial agents against infections.

摘要

是一种革兰氏阴性细菌,可导致蔷薇科植物发生火疫病。其毒性与其产生的一种叫做果聚糖的胞外多糖(EPS)有关,该多糖可以保护细菌免受周围环境的影响,并有助于其在宿主内扩散。果聚糖的生物合成依赖于在 操纵子中簇集表达的十二个基因。这些基因中的一个, ,编码一种叫做 AmsI 的低分子量蛋白酪氨酸磷酸酶(LMW-PTP),它在 EPS 生产途径的调控中起着关键作用。出于这个原因,在这项工作中选择了 AmsI 作为开发针对 的新型抗菌剂的靶标。为了实现这一目标,使用了大约 700 种分子的数据库,选择了一组程序(DOCK6、OpenEye FRED)来进行虚拟筛选。从六种得分最高的化合物中筛选出的化合物在体外试验中进行了测试。对最有前途的分子(正庚基 β-D-吡喃葡萄糖苷,N7G)进行的完整抑制动力学特征分析表明,其抑制常数为 7.8±0.6µM。这项研究代表了朝着开发能够作为针对 感染的抗菌剂的新型 AmsI 抑制剂迈出的初步一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a407/10708540/c8932be4bfbe/molecules-28-07774-sch001.jpg

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