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Machine learning enabled multiplex detection of periodontal pathogens by surface-enhanced Raman spectroscopy.

作者信息

Rathnayake Rathnayake A C, Zhao Zhenghao, McLaughlin Nathan, Li Wei, Yan Yan, Chen Liaohai L, Xie Qian, Wu Christine D, Mathew Mathew T, Wang Rong R

机构信息

Department of Chemistry, Illinois Institute of Technology, Chicago, IL 60616, United States of America.

Department of Computer Science, Illinois Institute of Technology, Chicago, IL 60616, United States of America.

出版信息

Int J Biol Macromol. 2024 Feb;257(Pt 2):128773. doi: 10.1016/j.ijbiomac.2023.128773. Epub 2023 Dec 13.


DOI:10.1016/j.ijbiomac.2023.128773
PMID:38096932
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11282452/
Abstract

Periodontitis is a chronic inflammation of the periodontium caused by a persistent bacterial infection, resulting in destruction of the supporting structures of teeth. Analysis of microbial composition in saliva can inform periodontal status. Actinobacillus actinomycetemcomitans (Aa), Porphyromonas gingivalis (Pg), and Streptococcus mutans (Sm) are among reported periodontal pathogens, and were used as model systems in this study. Our atomic force microscopic (AFM) study revealed that these pathogens are biological nanorods with dimensions of 0.6-1.1 μm in length and 500-700 nm in width. Current bacterial detection methods often involve complex preparation steps and require labeled reporting motifs. Employing surface-enhanced Raman spectroscopy (SERS), we revealed cell-type specific Raman signatures of these pathogens for label-free detection. It overcame the complexity associated with spectral overlaps among different bacterial species, relying on high signal-to-noise ratio (SNR) spectra carefully collected from pure species samples. To enable simple, rapid, and multiplexed detection, we harnessed advanced machine learning techniques to establish predictive models based on a large set of raw spectra of each bacterial species and their mixtures. Using these models, given a raw spectrum collected from a bacterial suspension, simultaneous identification of all three species in the test sample was achieved at 95.6 % accuracy. This sensing modality can be applied to multiplex detection of a broader range and a larger set of periodontal pathogens, paving the way for hassle-free detection of oral bacteria in saliva with little to no sample preparation.

摘要

相似文献

[1]
Machine learning enabled multiplex detection of periodontal pathogens by surface-enhanced Raman spectroscopy.

Int J Biol Macromol. 2024-2

[2]
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本文引用的文献

[1]
A Review on Saliva-Based Health Diagnostics: Biomarker Selection and Future Directions.

Biomed Mater Devices. 2023-6-6

[2]
Rapid detection of beer spoilage bacteria based on label-free SERS technology.

Anal Methods. 2022-12-15

[3]
Distinctive structure, composition and biomechanics of collagen fibrils in vaginal wall connective tissues associated with pelvic organ prolapse.

Acta Biomater. 2022-10-15

[4]
Prospects of Surface-Enhanced Raman Spectroscopy for Biomarker Monitoring toward Precision Medicine.

ACS Photonics. 2022-2-16

[5]
Exploring Sensitive Label-Free Multiplex Analysis with Raman-Coded Microbeads and SERS-Coded Reporters.

Biosensors (Basel). 2022-2-16

[6]
Separation-free bacterial identification in arbitrary media via deep neural network-based SERS analysis.

Biosens Bioelectron. 2022-4-15

[7]
Differentiation of Closely Related Oak-Associated Gram-Negative Bacteria by Label-Free Surface Enhanced Raman Spectroscopy (SERS).

Microorganisms. 2021-9-16

[8]
In Search of Spectroscopic Signatures of Periodontitis: A SERS-Based Magnetomicrofluidic Sensor for Detection of and .

ACS Sens. 2021-4-23

[9]
Global Prevalence of Periodontal Disease and Lack of Its Surveillance.

ScientificWorldJournal. 2020

[10]
The Human Oral Microbiome in Health and Disease: From Sequences to Ecosystems.

Microorganisms. 2020-2-23

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