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在低抗菌药物耐药率环境中,万古霉素耐药和敏感菌的种群结构高度受循环的全球医院相关克隆的影响。

The population structure of vancomycin-resistant and -susceptible in a low-prevalence antimicrobial resistance setting is highly influenced by circulating global hospital-associated clones.

机构信息

Research group for Host-Microbe Interactions, Department of Medical Biology, UiT The Arctic University of Norway, Tromsø, Norway.

Norwegian National Advisory Unit on Detection of Antimicrobial Resistance, Department of Microbiology and Infection Control, University Hospital of North Norway, Tromsø, Norway.

出版信息

Microb Genom. 2023 Dec;9(12). doi: 10.1099/mgen.0.001160.

Abstract

Between 2010 and 2015 the incidence of vancomycin-resistant (VRE) in Norway increased dramatically. Hence, we selected (1) a random subset of vancomycin-resistant enterococci (VRE) from the Norwegian Surveillance System for Communicable Diseases (2010-15; =239) and (2) Norwegian vancomycin-susceptible (VSE) bacteraemia isolates from the national surveillance system for antimicrobial resistance in microbes (2008 and 2014; =261) for further analysis. Whole-genome sequences were collected for population structure, gene cluster, mobile genetic element and virulome analysis, as well as antimicrobial susceptibility testing. Comparative genomic and phylogeographical analyses were performed with complete genomes of global strains from the National Center for Biotechnology Information (NCBI) (1946-2022; =272). All Norwegian VRE and most of the VSE clustered with global hospital-associated sequence types (STs) in the phylogenetic subclade A1. The subtype carried by chromosomal Tn integrative conjugative elements was the dominant type. The major Norwegian VRE cluster types (CTs) were in accordance with concurrent European CTs. The dominant -type VRE CTs, ST192-CT3/26 and ST117-CT24, were mostly linked to a single hospital in Norway where the clones spread after independent chromosomal acquisition of Tn. The less prevalent VRE were associated with more diverse CTs and carrying Inc18 or RepA_N plasmids with toxin-antitoxin systems. Only 5 % of the Norwegian VRE were all of which contained . The Norwegian VRE and VSE isolates harboured CT-specific virulence factor (VF) profiles supporting biofilm formation and colonization. The dominant VRE CTs in general hosted more virulence determinants than VSE. The phylogenetic clade B VSE isolates (=21) recently classified as , harboured fewer VFs than in general, and particularly subclade A1 isolates. In conclusion, the population structure of Norwegian isolates mirrors the globally prevalent clones and particularly concurrent European VRE/VSE CTs. Novel chromosomal acquisition of on Tn from the gut microbiota, however, formed a single major hospital VRE outbreak. Dominant VRE CTs contained more VFs than VSE.

摘要

2010 年至 2015 年期间,挪威万古霉素耐药肠球菌(VRE)的发病率急剧上升。因此,我们选择了(1)从挪威传染病监测系统(2010-15 年;=239)中随机抽取万古霉素耐药肠球菌(VRE)的一部分,以及(2)挪威国家抗菌药物耐药性微生物监测系统中的万古霉素敏感菌(VSE)菌血症分离株(2008 年和 2014 年;=261)进行进一步分析。收集全基因组序列进行种群结构、基因簇、移动遗传元件和毒力组分析以及抗菌药物敏感性测试。与来自国家生物技术信息中心(NCBI)的全球菌株的完整基因组进行比较基因组和系统地理学分析(1946-2022 年;=272)。所有挪威 VRE 和大多数 VSE 与系统发育亚群 A1 中的全球医院相关序列类型(ST)聚类。由染色体 Tn 整合性接合元件携带的亚型是主要的 类型。由染色体 Tn 整合性接合元件携带的亚型是主要的 类型。主要的挪威 VRE 聚类类型(CTs)与同期欧洲 CTs 一致。主要的 VRE CTs,ST192-CT3/26 和 ST117-CT24,主要与挪威的一家医院有关,克隆在独立获得 Tn 后在该医院传播。不太常见的 VRE 与更多样化的 CTs 相关,并携带 Inc18 或 RepA_N 质粒,其中含有毒素-抗毒素系统。只有 5%的挪威 VRE 携带 ,其中都包含 。挪威 VRE 和 VSE 分离株携带 CT 特异性毒力因子(VF)谱,支持生物膜形成和定植。一般来说,主要的 VRE CT 携带更多的毒力决定因素,而不是 VSE。最近被分类为 的系统发育支 B VSE 分离株(=21)携带的 VFs 比一般情况下要少,特别是亚群 A1 分离株。总之,挪威 分离株的种群结构反映了全球流行的克隆,特别是同期欧洲的 VRE/VSE CTs。然而,从肠道微生物群中 Tn 上获得的新型染色体获得是单一主要医院 VRE 爆发的原因。主要的 VRE CT 携带更多的 VFs,而不是 VSE。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d65c/10763505/f96959902f31/mgen-9-1160-g001.jpg

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