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基于生物信息学分析和体外实验证据探索吸烟所致慢性阻塞性肺疾病的发病机制

Exploration of the Pathogenesis of Chronic Obstructive Pulmonary Disease Caused by Smoking-Based on Bioinformatics Analysis and In Vitro Experimental Evidence.

作者信息

Zhang Yingchi, Sheng Yuxin, Gao Yanrong, Lin Yujia, Cheng Bin, Li Hongmei, Zhang Ling, Xu Haiming

机构信息

School of Public Health, Ningxia Medical University, Yinchuan 750004, China.

The Key Laboratory of Environmental Factors and Chronic Disease Control, Yinchuan 750004, China.

出版信息

Toxics. 2023 Dec 7;11(12):995. doi: 10.3390/toxics11120995.

Abstract

This study was aimed at investigating the pathogenesis of chronic obstructive pulmonary disease (COPD) caused by smoking-based on bioinformatics analysis and in vitro experimental evidence. The GEO, GEO2R, TargetScan, miRDB, miRWalk, DAVID, and STRING databases were used for bioinformatics analysis. The mRNA expression and the protein levels were determined by real-time PCR and ELISA. After taking the intersection of the diversified results of the databases, four differentially expressed miRNAs (hsa-miR-146a, hsa-miR-708, hsa-miR-150, and hsa-miR-454) were screened out. Subsequently, a total of 57 target genes of the selected miRNAs were obtained. The results of DAVID analysis showed that the selected miRNAs participated in COPD pathogenesis through long-term potentiation, the TGF-β signaling pathway, the PI3K-Akt signaling pathway, etc. The results of STRING prediction showed that TP53, EP300, and MAPK1 were the key nodes of the PPI network. The results of the confirmatory experiment showed that, compared with the control group, the mRNA expression of , and were up-regulated, while the expression of MYB was down-regulated and the protein levels of ZEB1, MAPK1, and EP300 were increased. Taken together, miRNAs (hsa-miR-146a, hsa-miR-708, hsa-miR-150, and hsa-miR-454) and their regulated target genes and downstream protein molecules (ZEB1, EP300, and MAPK1) may be closely related to the pathological process of COPD.

摘要

本研究旨在基于生物信息学分析和体外实验证据,探讨吸烟所致慢性阻塞性肺疾病(COPD)的发病机制。利用GEO、GEO2R、TargetScan、miRDB、miRWalk、DAVID和STRING数据库进行生物信息学分析。通过实时PCR和ELISA测定mRNA表达和蛋白质水平。在对数据库的多样结果取交集后,筛选出4个差异表达的miRNA(hsa-miR-146a、hsa-miR-708、hsa-miR-150和hsa-miR-454)。随后,获得了所选miRNA的总共57个靶基因。DAVID分析结果表明,所选miRNA通过长时程增强、TGF-β信号通路、PI3K-Akt信号通路等参与COPD发病机制。STRING预测结果表明,TP53、EP300和MAPK1是PPI网络的关键节点。验证实验结果表明,与对照组相比, 、 和 的mRNA表达上调,而MYB表达下调,ZEB1、MAPK1和EP300的蛋白质水平升高。综上所述,miRNA(hsa-miR-146a、hsa-miR-708、hsa-miR-150和hsa-miR-454)及其调控的靶基因和下游蛋白质分子(ZEB1、EP300和MAPK1)可能与COPD的病理过程密切相关。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f95c/10747869/f6d1ee0bf5df/toxics-11-00995-g001.jpg

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