Kurbanova Malahat Musrat, Maharramov Abel Mammadali, Sadigova Arzu Zabit, Gurbanova Fidan Zaur, Mali Suraj Narayan, Al-Salahi Rashad, El Bakri Youness, Lai Chin-Hung
Organic Chemistry Department, Baku State University, Z. Khalilov 23, Baku 1148, Azerbaijan.
Department of Pharmacy and Biotechnology, Bioinformatics, University of Bologna, Via Marsala, 49/A, 40126 Bologna, Italy.
Bioengineering (Basel). 2023 Nov 27;10(12):1361. doi: 10.3390/bioengineering10121361.
Despite extensive genetic and biochemical characterization, the molecular genetic basis underlying the biosynthesis of β-diketones remains largely unexplored. β-Diketones and their complexes find broad applications as biologically active compounds. In this study, in silico molecular docking results revealed that two β-diketone derivatives, namely 2-(2-(4-fluorophenyl)hydrazono)-5,5-dimethylcyclohexane-1,3-dione and 5,5-dimethyl-2-(2-(2-(trifluoromethyl)phenyl)hydrazono)cyclohexane-1,3-dione, exhibit anti-COX-2 activities. However, recent docking results indicated that the relative anti-COX-2 activity of these two studied β-diketones was influenced by the employed docking programs. For improved design of COX-2 inhibitors from β-diketones, we conducted molecular dynamics simulations, density functional theory (DFT) calculations, Hirshfeld surface analysis, energy framework, and ADMET studies. The goal was to understand the interaction mechanisms and evaluate the inhibitory characteristics. The results indicate that 5,5-dimethyl-2-(2-(2-(trifluoromethyl)phenyl)hydrazono)cyclohexane-1,3-dione shows greater anti-COX-2 activity compared to 2-(2-(4-fluorophenyl)hydrazono)-5,5-dimethylcyclohexane-1,3-dione.
尽管进行了广泛的遗传和生化表征,但β-二酮生物合成的分子遗传基础在很大程度上仍未得到探索。β-二酮及其配合物作为生物活性化合物有着广泛的应用。在本研究中,计算机模拟分子对接结果显示,两种β-二酮衍生物,即2-(2-(4-氟苯基)腙基)-5,5-二甲基环己烷-1,3-二酮和5,5-二甲基-2-(2-(2-(三氟甲基)苯基)腙基)环己烷-1,3-二酮,具有抗COX-2活性。然而,最近的对接结果表明,这两种研究的β-二酮的相对抗COX-2活性受所采用的对接程序影响。为了从β-二酮改进设计COX-2抑制剂,我们进行了分子动力学模拟、密度泛函理论(DFT)计算、 Hirshfeld表面分析、能量框架和ADMET研究。目的是了解相互作用机制并评估抑制特性。结果表明,与2-(2-(4-氟苯基)腙基)-5,5-二甲基环己烷-1,3-二酮相比,5,5-二甲基-2-(2-(2-(三氟甲基)苯基)腙基)环己烷-1,3-二酮显示出更大的抗COX-2活性。