Modolon Flúvio, Schultz Júnia, Duarte Gustavo, Vilela Caren Leite Spindola, Thomas Torsten, Peixoto Raquel Silva
Laboratory of Molecular Microbial Ecology, Institute of Microbiology, Federal University of Rio de Janeiro, Rio de Janeiro 21941-902, Brazil.
King Abdullah University of Science and Technology (KAUST), Marine Science and Bioscience Programs, Red Sea Research Center (RSRC) and Computational Biology Center (CBRC), Environmental and Engineering Sciences Division (BESE Thuwal, Makkah 23955, Saudi Arabia.
iScience. 2023 Nov 13;26(12):108374. doi: 10.1016/j.isci.2023.108374. eCollection 2023 Dec 15.
Most microorganisms found in environmental samples have never been cultured and can often only be explored through molecular or microscopic approaches. Here, we adapt the use of diffusion-based devices to culture "yet-to-be-cultured" microorganisms associated with coral mucus and compare this with a traditional culturing method. The culturability of microorganisms associated with mucus of the coral increased by 420% and 570% with diffusion growth chambers and microwell chip devices, respectively, compared with the traditional method tested. The obtained cultures represent up to 64.4% of the total diversity of amplicon sequence variants (ASVs) found in the mucus of the coral . In addition, some previously uncultured microorganisms, such as members of the family and halophilic/halotolerant bacteria were cultured. Our results validate alternative microbial culturing strategies to culture coral-associated microorganisms, while significantly increasing the culturability of previous microbial dark matter.
环境样本中发现的大多数微生物从未被培养过,通常只能通过分子或显微镜方法进行探索。在此,我们采用基于扩散的装置来培养与珊瑚黏液相关的“尚未培养”的微生物,并将其与传统培养方法进行比较。与传统测试方法相比,使用扩散生长室和微孔芯片装置时,与珊瑚黏液相关的微生物的可培养性分别提高了420%和570%。所获得的培养物占珊瑚黏液中发现的扩增子序列变体(ASV)总多样性的64.4%。此外,一些以前未培养的微生物,如某些科的成员和嗜盐/耐盐细菌也被培养出来。我们的结果验证了培养与珊瑚相关微生物的替代微生物培养策略,同时显著提高了以前微生物暗物质的可培养性。