Peeb Angela, Dang Nga Phuong, Truu Marika, Nõlvak Hiie, Petrich Chris, Truu Jaak
Institute of Molecular and Cell Biology, University of Tartu, 51010 Tartu, Estonia.
Department of Cold Climate Technology, SINTEF Narvik AS, N-8504 Narvik, Norway.
Microorganisms. 2022 Feb 1;10(2):328. doi: 10.3390/microorganisms10020328.
The anthropogenic release of oil hydrocarbons into the cold marine environment is an increasing concern due to the elevated usage of sea routes and the exploration of new oil drilling sites in Arctic areas. The aim of this study was to evaluate prokaryotic community structures and the genetic potential of hydrocarbon degradation in the metagenomes of seawater, sea ice, and crude oil encapsulating the sea ice of the Norwegian fjord, Ofotfjorden. Although the results indicated substantial differences between the structure of prokaryotic communities in seawater and sea ice, the crude oil encapsulating sea ice (SIO) showed increased abundances of many genera-containing hydrocarbon-degrading organisms, including , , and . Although the metagenome of seawater was rich in a variety of hydrocarbon degradation-related functional genes (HDGs) associated with the metabolism of n-alkanes, and mono- and polyaromatic hydrocarbons, most of the normalized gene counts were highest in the clean sea ice metagenome, whereas in SIO, these counts were the lowest. The long-chain alkane degradation gene was detected from all the studied metagenomes and its counts exceeded and counts in both sea ice metagenomes. In addition, was related to the most diverse group of prokaryotic genera. Almost all 18 good- and high-quality metagenome-assembled genomes (MAGs) had diverse HDGs profiles. The MAGs recovered from the SIO metagenome belonged to the abundant taxa, such as , , and , in this environment. The genera associated with HDGs were often previously known as hydrocarbon-degrading genera. However, a substantial number of new associations, either between already known hydrocarbon-degrading genera and new HDGs or between genera not known to contain hydrocarbon degraders and multiple HDGs, were found. The superimposition of the results of comparing HDG associations with taxonomy, the HDG profiles of MAGs, and the full genomes of organisms in the KEGG database suggest that the found relationships need further investigation and verification.
由于海上航线使用的增加以及北极地区新石油钻探地点的勘探,人为向寒冷海洋环境中释放石油碳氢化合物日益受到关注。本研究的目的是评估挪威峡湾奥福特峡湾海水、海冰以及包裹海冰的原油宏基因组中的原核生物群落结构和碳氢化合物降解的遗传潜力。尽管结果表明海水和海冰中原核生物群落结构存在显著差异,但包裹海冰的原油(SIO)显示出许多含有碳氢化合物降解生物的属的丰度增加,包括 、 和 。虽然海水宏基因组富含与正构烷烃、单环和多环芳烃代谢相关的各种碳氢化合物降解相关功能基因(HDGs),但大多数标准化基因计数在清洁海冰宏基因组中最高,而在SIO中,这些计数最低。在所有研究的宏基因组中都检测到了长链烷烃降解基因 ,其计数超过了两个海冰宏基因组中的 和 计数。此外, 与最多样化的原核生物属组相关。几乎所有18个高质量的宏基因组组装基因组(MAGs)都有不同的HDGs谱。从SIO宏基因组中回收的MAGs属于该环境中丰富的分类群,如 、 和 。与HDGs相关的属通常以前被认为是碳氢化合物降解属。然而,发现了大量新的关联,要么是已知的碳氢化合物降解属与新的HDGs之间,要么是未知含有碳氢化合物降解菌的属与多个HDGs之间。将HDG关联与分类学、MAGs的HDG谱以及KEGG数据库中生物体的全基因组比较结果叠加表明,所发现的关系需要进一步研究和验证。