Junsiri Witchuta, Islam Sk Injamamul, Thiptara Auyarat, Jeenpun Autthaporn, Sangkhapaitoon Piyanan, Thongcham Khunanont, Phakphien Rattanakorn, Taweethavonsawat Piyanan
Parasitology Unit, Department of Pathology, Faculty of Veterinary Science, Chulalongkorn University, Bangkok, Thailand.
Epidemiology and Information Group, Veterinary Research and Development Center (Upper Southern Region), Nakhon Sri Thammarat, Thailand.
Front Vet Sci. 2023 Dec 7;10:1313783. doi: 10.3389/fvets.2023.1313783. eCollection 2023.
This study investigates the identification, genetic composition, and placement in the evolutionary tree of a particular nematode species found in a short-finned pilot whale in the Gulf of Thailand. To accomplish this, we utilized various methods, including microscopic observations, molecular techniques, and comparative analyses to better understand the characteristics of this parasite. Initially, we concentrated on studying the 18s rDNA sequence through nested PCR, resulting in a 774-bp product. After conducting a BLASTn analysis, we discovered that there were only a few sequences in the GeneBank that shared similarities with our nematode, particularly with , although the percent identity was relatively low. To confirm the uniqueness of our sequence, we constructed a phylogenetic tree that demonstrated a distinct branch for our nematode, suggesting significant genetic differentiation from . Additionally, we sequenced a 399-bp section of the ITS2 gene using PCR, and the resulting data showed a close association with the Strongylidae family, specifically with . This was further confirmed by BLASTn and CD-HIT-est results, which indicated a 99 and ~94% sequence homology with , respectively. The ITS2 phylogenetic tree also supported the position of our isolated sequence within the Strongylidae family, clustering closely with . Our findings shed light on the genetic connections, taxonomy, and evolutionary trends within the Strongylidae family, with a particular focus on the widespread nature of the genus. This study emphasizes the importance of utilizing molecular techniques and interdisciplinary approaches to gain insight into nematode diversity, evolution, and ecological dynamics in marine environments.
本研究调查了在泰国湾短鳍领航鲸体内发现的一种特定线虫物种的鉴定、遗传组成及其在进化树中的位置。为实现这一目标,我们采用了多种方法,包括显微镜观察、分子技术和比较分析,以更好地了解这种寄生虫的特征。最初,我们通过巢式PCR专注于研究18s rDNA序列,得到了一个774碱基对的产物。在进行BLASTn分析后,我们发现基因库中只有少数序列与我们的线虫相似,特别是与 ,尽管百分比同一性相对较低。为了确认我们序列的独特性,我们构建了一个系统发育树,该树显示我们的线虫有一个独特的分支,表明与 有显著的遗传分化。此外,我们使用PCR对ITS2基因的399碱基对片段进行了测序,结果数据显示与圆线科家族密切相关,特别是与 。BLASTn和CD-HIT-est结果进一步证实了这一点,结果分别表明与 有99%和约94%的序列同源性。ITS2系统发育树也支持我们分离序列在圆线科家族中的位置,与 紧密聚类。我们的研究结果揭示了圆线科家族内部的遗传联系、分类学和进化趋势,特别关注 属的广泛分布。本研究强调了利用分子技术和跨学科方法来深入了解海洋环境中线虫多样性、进化和生态动态的重要性。