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宽链长特异性的烷烃形成酶 NoCER1A 和 NoCER3A/B 在睡莲。

Broad Chain-Length Specificity of the Alkane-Forming Enzymes NoCER1A and NoCER3A/B in Nymphaea odorata.

机构信息

Technical Center, Nagoya University, Nagoya, 464-8601 Japan.

Graduate School of Bioagricultural Sciences, Nagoya University, Nagoya, 464-8601 Japan.

出版信息

Plant Cell Physiol. 2024 Apr 16;65(3):428-446. doi: 10.1093/pcp/pcad168.

DOI:10.1093/pcp/pcad168
PMID:38174441
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11020225/
Abstract

Many terrestrial plants produce large quantities of alkanes for use in epicuticular wax and the pollen coat. However, their carbon chains must be long to be useful as fuel or as a petrochemical feedstock. Here, we focus on Nymphaea odorata, which produces relatively short alkanes in its anthers. We identified orthologs of the Arabidopsis alkane biosynthesis genes AtCER1 and AtCER3 in N. odorata and designated them NoCER1A, NoCER3A and NoCER3B. Expression analysis of NoCER1A and NoCER3A/B in Arabidopsis cer mutants revealed that the N. odorata enzymes cooperated with the Arabidopsis enzymes and that the NoCER1A produced shorter alkanes than AtCER1, regardless of which CER3 protein it interacted with. These results indicate that AtCER1 frequently uses a C30 substrate, whereas NoCER1A, NoCER3A/B and AtCER3 react with a broad range of substrate chain lengths. The incorporation of shorter alkanes disturbed the formation of wax crystals required for water-repellent activity in stems, suggesting that chain-length specificity is important for surface cleaning. Moreover, cultured tobacco cells expressing NoCER1A and NoCER3A/B effectively produced C19-C23 alkanes, indicating that the introduction of the two enzymes is sufficient to produce alkanes. Taken together, our findings suggest that these N. odorata enzymes may be useful for the biological production of alkanes of specific lengths. 3D modeling revealed that CER1s and CER3s share a similar structure that consists of N- and C-terminal domains, in which their predicted active sites are respectively located. We predicted the complex structure of both enzymes and found a cavity that connects their active sites.

摘要

许多陆生植物为了形成角质层蜡质和花粉外壁,会大量生成烷烃。但是,这些烷烃的碳链必须足够长,才能用作燃料或石化原料。本研究以产生短链烷烃的芡实为研究对象。我们鉴定出芡属 Nymphaea odorata 中与拟南芥烷烃生物合成基因 AtCER1 和 AtCER3 同源的基因,并将其命名为 NoCER1A、NoCER3A 和 NoCER3B。通过对 Arabidopsis cer 突变体中 NoCER1A 和 NoCER3A/B 的表达分析,发现 N. odorata 中的酶与 Arabidopsis 酶共同作用,且 NoCER1A 生成的烷烃比 AtCER1 短,而与其相互作用的 CER3 蛋白无关。这些结果表明,AtCER1 常利用 C30 底物,而 NoCER1A、NoCER3A/B 和 AtCER3 则与各种长度的底物链发生反应。较短的烷烃的掺入扰乱了形成茎部防水活性所需的蜡晶的形成,这表明链长特异性对于表面清洁很重要。此外,表达 NoCER1A 和 NoCER3A/B 的烟草细胞有效地生成了 C19-C23 烷烃,这表明引入这两种酶足以生成烷烃。综上,本研究结果表明,这些芡属酶可能有助于生物合成特定长度的烷烃。3D 建模揭示了 CER1s 和 CER3s 具有相似的结构,由 N 端和 C 端结构域组成,其预测的活性位点分别位于其中。我们预测了两种酶的复合物结构,并发现了一个连接它们活性位点的空腔。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/4c084e1a3f3d/pcad168f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/a40343a153be/pcad168f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/ea9f1d64679e/pcad168f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/0484a5c26db7/pcad168f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/7e5ab9b2e9d2/pcad168f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/d2a8831ef33d/pcad168f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/cef6ee5f870c/pcad168f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/f5e3d2a82cb6/pcad168f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/4c084e1a3f3d/pcad168f8.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/a40343a153be/pcad168f1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/ea9f1d64679e/pcad168f2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/0484a5c26db7/pcad168f3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/7e5ab9b2e9d2/pcad168f4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/d2a8831ef33d/pcad168f5.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/cef6ee5f870c/pcad168f6.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/f5e3d2a82cb6/pcad168f7.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/18fb/11020225/4c084e1a3f3d/pcad168f8.jpg

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