• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过特定位置控制支架灵活性来实现硬全 DNA 树枝状大分子中的超软相互作用工程。

Engineering Ultrasoft Interactions in Stiff All-DNA Dendrimers by Site-Specific Control of Scaffold Flexibility.

机构信息

Faculty of Physics, University of Vienna, Boltzmanngasse 5, Vienna, A-1090, Austria.

Institute of Physics Belgrade, University of Belgrade, Pregrevica 118, Belgrade, 11080, Serbia.

出版信息

Small. 2024 May;20(21):e2308763. doi: 10.1002/smll.202308763. Epub 2024 Jan 6.

DOI:10.1002/smll.202308763
PMID:38183376
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11475228/
Abstract

A combined experimental and theoretical study of the structural correlations in moderately concentrated suspensions of all-DNA dendrimers of the second generation (G2) with controlled scaffold rigidity is reported here. Small-angle X-ray scattering experiments in concentrated aqueous saline solutions of stiff all-DNA G2 dendritic constructs reveal a novel anomalous liquid-like phase behavior which is reflected in the calculated structure factors as a two-step increase at low scattering wave vectors. By developing a new design strategy for adjusting the particle's internal flexibility based on site-selective incorporation of single-stranded DNA linkers into the dendritic scaffold, it is shown that this unconventional type of self-organization is strongly contingent on the dendrimer's stiffness. A comprehensive computer simulation study employing dendritic models with different levels of coarse-graining, and two theoretical approaches based on effective, pair-potential interactions, remarkably confirmed the origin of this unusual liquid-like behavior. The results demonstrate that the precise control of the internal structure of the dendritic scaffold conferred by the DNA can be potentially used to engineer a rich palette of novel ultrasoft interaction potentials that could offer a route for directed self-assembly of intriguing soft matter phases and experimental realizations of a host of unusual phenomena theoretically predicted for ultrasoft interacting systems.

摘要

本文报道了对具有可控支架刚性的第二代(G2)全 DNA 树枝状大分子的适度浓缩悬浮液中的结构相关性进行的实验和理论综合研究。在刚性全 DNA G2 树枝状大分子在浓盐水溶液中的小角度 X 射线散射实验中,发现了一种新颖的异常液态相行为,这反映在计算的结构因子中,表现为在低散射波数下的两步增加。通过开发一种新的设计策略,基于将单链 DNA 接头选择性地掺入树枝状支架中来调整颗粒的内部灵活性,表明这种非常规的自组织强烈依赖于树枝状大分子的刚性。采用具有不同粗粒化水平的树枝状模型以及基于有效对势相互作用的两种理论方法的全面计算机模拟研究,显著证实了这种异常液态行为的起源。结果表明,通过 DNA 赋予的树枝状支架的内部结构的精确控制,可以潜在地用于设计一系列新颖的超软相互作用势,这可能为有趣的软物质相的定向自组装提供途径,并实现了许多超软相互作用系统理论预测的异常现象的实验实现。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/a6f4c0f24eb2/SMLL-20-2308763-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/c5a3924aed98/SMLL-20-2308763-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/339f2be240bf/SMLL-20-2308763-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/d02398c19fce/SMLL-20-2308763-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/6edb60b3b04d/SMLL-20-2308763-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/cad94ad8a5d8/SMLL-20-2308763-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/034d17570232/SMLL-20-2308763-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/a6f4c0f24eb2/SMLL-20-2308763-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/c5a3924aed98/SMLL-20-2308763-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/339f2be240bf/SMLL-20-2308763-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/d02398c19fce/SMLL-20-2308763-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/6edb60b3b04d/SMLL-20-2308763-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/cad94ad8a5d8/SMLL-20-2308763-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/034d17570232/SMLL-20-2308763-g008.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/d03b/11475228/a6f4c0f24eb2/SMLL-20-2308763-g007.jpg

相似文献

1
Engineering Ultrasoft Interactions in Stiff All-DNA Dendrimers by Site-Specific Control of Scaffold Flexibility.通过特定位置控制支架灵活性来实现硬全 DNA 树枝状大分子中的超软相互作用工程。
Small. 2024 May;20(21):e2308763. doi: 10.1002/smll.202308763. Epub 2024 Jan 6.
2
Dendrimers in solution: insight from theory and simulation.溶液中的树枝状大分子:来自理论与模拟的见解
Angew Chem Int Ed Engl. 2004 Jun 7;43(23):2998-3020. doi: 10.1002/anie.200300602.
3
Structure and stimuli-responsiveness of all-DNA dendrimers: theory and experiment.全 DNA 树枝状大分子的结构与刺激响应:理论与实验。
Nanoscale. 2019 Jan 23;11(4):1604-1617. doi: 10.1039/c8nr05814h.
4
Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).大分子拥挤现象:化学与物理邂逅生物学(瑞士阿斯科纳,2012年6月10日至14日)
Phys Biol. 2013 Aug;10(4):040301. doi: 10.1088/1478-3975/10/4/040301. Epub 2013 Aug 2.
5
Molecular dynamics study of charged dendrimers in salt-free solution: effect of counterions.无盐溶液中带电树枝状大分子的分子动力学研究:抗衡离子的影响
J Chem Phys. 2006 Mar 7;124(9):94904. doi: 10.1063/1.2166396.
6
Enzymatic activation of second-generation dendritic prodrugs: Conjugation of self-immolative dendrimers with poly(ethylene glycol) via click chemistry.第二代树枝状前药的酶促激活:通过点击化学将自毁型树枝状大分子与聚乙二醇共轭。
Bioconjug Chem. 2006 Nov-Dec;17(6):1432-40. doi: 10.1021/bc060180n.
7
Molecular characterization of the interaction between siRNA and PAMAM G7 dendrimers by SAXS, ITC, and molecular dynamics simulations.通过小角 X 射线散射(SAXS)、等温热力学滴定(ITC)和分子动力学模拟研究 siRNA 与 PAMAM G7 树枝状聚合物相互作用的分子特征。
Biomacromolecules. 2010 Dec 13;11(12):3571-7. doi: 10.1021/bm101033g. Epub 2010 Nov 10.
8
Structural changes in lipid mesophases due to intercalation of dendritic polymer nanoparticles: Swollen lamellae, suppressed curvature, and augmented structural disorder.由于树枝状聚合物纳米粒子的插入,脂质中间相的结构变化:肿胀的层状结构、曲率降低和结构无序度增加。
Acta Biomater. 2020 Mar 1;104:198-209. doi: 10.1016/j.actbio.2019.12.036. Epub 2020 Jan 3.
9
Site-specific positioning of dendritic alkyl chains on DNA cages enables their geometry-dependent self-assembly.DNA 笼状结构上树枝状烷基链的特定位置赋予其几何形状依赖性的自组装能力。
Nat Chem. 2013 Oct;5(10):868-75. doi: 10.1038/nchem.1745. Epub 2013 Sep 1.
10
Structure Tuning of Electrostatically Self-Assembled Nanoparticles through pH.通过pH值对静电自组装纳米颗粒进行结构调控
J Phys Chem B. 2016 Feb 25;120(7):1380-9. doi: 10.1021/acs.jpcb.5b10966. Epub 2016 Feb 11.

本文引用的文献

1
Design and simulation of DNA, RNA and hybrid protein-nucleic acid nanostructures with oxView.使用 oxView 设计和模拟 DNA、RNA 及蛋白-核酸杂化纳米结构。
Nat Protoc. 2022 Aug;17(8):1762-1788. doi: 10.1038/s41596-022-00688-5. Epub 2022 Jun 6.
2
Glass quantization of the Gaussian core model.高斯核模型的格拉斯量化
Phys Rev E. 2022 Feb;105(2-1):024607. doi: 10.1103/PhysRevE.105.024607.
3
Self assembling cluster crystals from DNA based dendritic nanostructures.基于 DNA 树枝状纳米结构的自组装聚集体晶体。
Nat Commun. 2021 Dec 9;12(1):7167. doi: 10.1038/s41467-021-27412-3.
4
Self-Assembly of All-DNA Rods with Controlled Patchiness.具有可控粗糙度的全 DNA 棒的自组装。
Small. 2022 Feb;18(5):e2104510. doi: 10.1002/smll.202104510. Epub 2021 Nov 27.
5
DNA Self-Assembly Mediated by Programmable Soft-Patchy Interactions.由可编程软补丁相互作用介导的DNA自组装
ACS Nano. 2020 Oct 27;14(10):13524-13535. doi: 10.1021/acsnano.0c05536. Epub 2020 Oct 13.
6
Soft matter with soft particles.含有软颗粒的软物质。
Soft Matter. 2006 May 26;2(6):478-498. doi: 10.1039/b601916c.
7
DNA Functional Materials Assembled from Branched DNA: Design, Synthesis, and Applications.从支化 DNA 组装的 DNA 功能材料:设计、合成与应用。
Chem Rev. 2020 Sep 9;120(17):9420-9481. doi: 10.1021/acs.chemrev.0c00294. Epub 2020 Jul 16.
8
Design, optimization and analysis of large DNA and RNA nanostructures through interactive visualization, editing and molecular simulation.通过交互式可视化、编辑和分子模拟对大型DNA和RNA纳米结构进行设计、优化与分析。
Nucleic Acids Res. 2020 Jul 9;48(12):e72. doi: 10.1093/nar/gkaa417.
9
Slow dynamics coupled with cluster formation in ultrasoft-potential glasses.超软势玻璃中慢动力学与团簇形成的耦合。
J Chem Phys. 2019 Feb 21;150(7):074503. doi: 10.1063/1.5086379.
10
Chemistries for DNA Nanotechnology.DNA 纳米技术化学。
Chem Rev. 2019 May 22;119(10):6384-6458. doi: 10.1021/acs.chemrev.8b00570. Epub 2019 Feb 4.