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CryoDRGN-ET: deep reconstructing generative networks for visualizing dynamic biomolecules inside cells.
Nat Methods. 2024 Aug;21(8):1537-1545. doi: 10.1038/s41592-024-02340-4. Epub 2024 Jul 18.
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AI-driven multiscale simulations illuminate mechanisms of SARS-CoV-2 spike dynamics.
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The dawn of interoperating spatial models in cell biology.
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A new tool for annotating scientific animations and supporting scientific dialogue.
PLoS Biol. 2022 Aug 4;20(8):e3001731. doi: 10.1371/journal.pbio.3001731. eCollection 2022 Aug.
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PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology.
J Mol Biol. 2022 Jun 15;434(11):167599. doi: 10.1016/j.jmb.2022.167599. Epub 2022 Apr 20.
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The Simularium Viewer: an interactive online tool for sharing spatiotemporal biological models.
Nat Methods. 2022 May;19(5):513-515. doi: 10.1038/s41592-022-01442-1.
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NMMD: Efficient Cryo-EM Flexible Fitting Based on Simultaneous Normal Mode and Molecular Dynamics atomic displacements.
J Mol Biol. 2022 Apr 15;434(7):167483. doi: 10.1016/j.jmb.2022.167483. Epub 2022 Feb 9.
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Using animation to mediate scientific discourse.
Nat Microbiol. 2022 Jan;7(1):3. doi: 10.1038/s41564-021-01024-5.

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