Department of Breast Surgery, International University of Health and Welfare, Chiba 286-8520, Japan.
Department of General Surgical Science, Gunma University Graduate School of Medicine, Gunma 371-8511, Japan.
Int J Mol Sci. 2023 Dec 19;25(1):35. doi: 10.3390/ijms25010035.
This study aimed to identify microRNAs associated with histological grade using comprehensive microRNA analysis data obtained by next-generation sequencing from early-stage invasive breast cancer. RNA-seq data from normal breast and breast cancer samples were compared to identify candidate microRNAs with differential expression using bioinformatics. A total of 108 microRNAs were significantly differentially expressed in normal breast and breast cancer tissues. Using clinicopathological information and microRNA sequencing data of 430 patients with breast cancer from The Cancer Genome Atlas (TCGA), the differences in candidate microRNAs between low- and high-grade tumors were identified. Comparing the expression of the 108 microRNAs between low- and high-grade cases, 25 and 18 microRNAs were significantly upregulated and downregulated, respectively, in high-grade cases. Clustering analysis of the TCGA cohort using these 43 microRNAs identified two groups strongly predictive of histological grade. miR-3677 is a microRNA upregulated in high-grade breast cancer. The outcome analysis revealed that patients with high miR-3677 expression had significantly worse prognosis than those with low miR-3677 expression. This study shows that microRNAs are associated with histological grade in early-stage invasive breast cancer. These findings contribute to the elucidation of a new mechanism of breast cancer growth regulated by specific microRNAs.
本研究旨在通过下一代测序获得的早期浸润性乳腺癌综合 miRNA 分析数据,鉴定与组织学分级相关的 microRNAs。通过生物信息学比较正常乳腺和乳腺癌样本的 RNA-seq 数据,鉴定出具有差异表达的候选 microRNAs。在 TCGA 中,通过对 430 名乳腺癌患者的临床病理信息和 microRNA 测序数据进行比较,鉴定出低级别和高级别肿瘤之间候选 microRNAs 的差异。在低级别和高级别病例之间比较这 108 个 microRNAs 的表达情况,发现 25 个 microRNAs 在高级别病例中显著上调,18 个 microRNAs显著下调。使用这 43 个 microRNAs 对 TCGA 队列进行聚类分析,确定了两个与组织学分级高度相关的组。miR-3677 是在高级别乳腺癌中上调的 microRNA。生存分析显示,miR-3677 高表达的患者预后明显比 miR-3677 低表达的患者差。本研究表明,microRNAs 与早期浸润性乳腺癌的组织学分级有关。这些发现有助于阐明受特定 microRNAs 调控的乳腺癌生长的新机制。