Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, China.
Chemistry. 2024 Mar 15;30(16):e202303845. doi: 10.1002/chem.202303845. Epub 2024 Jan 29.
SznF, a member of the emerging family of heme-oxygenase-like (HO-like) di-iron oxidases and oxygenases, employs two distinct domains to catalyze the conversion of N-methyl-L-arginine (L-NMA) into N-nitroso-containing product, which can subsequently be transformed into streptozotocin. Using unrestricted density functional theory (UDFT) with the hybrid functional B3LYP, we have mechanistically investigated the two sequential hydroxylations of L-NMA catalyzed by SznF's binuclear iron central domain. Mechanism B primarily involves the O-O bond dissociation, forming Fe(IV)=O, induced by the H/e introduction to the Fe side of μ-1,2-peroxo-Fe(III/III), the substrate hydrogen abstraction by Fe(IV)=O, and the hydroxyl rebound to the substrate N radical. The stochastic addition of H/e to the Fe side (mechanism C) can transition to mechanism B, thereby preventing enzyme deactivation. Two other competing mechanisms, involving the direct O-O bond dissociation (mechanism A) and the addition of HO as a co-substrate (mechanism D), have been ruled out.
SznF 是新兴的血红素加氧酶样(HO-like)双铁氧化酶和加氧酶家族的成员之一,它采用两个不同的结构域来催化 N-甲基-L-精氨酸(L-NMA)转化为含有亚硝酰基的产物,随后该产物可转化为链脲佐菌素。本研究采用含混合泛函 B3LYP 的非限制密度泛函理论(UDFT),对 SznF 双核铁中心结构域催化的 L-NMA 的两次连续羟化作用进行了机理研究。机理 B 主要涉及 O-O 键的解离,在 μ-1,2-过氧-Fe(III/III)的 Fe 侧引入 H/e 后形成 Fe(IV)=O,Fe(IV)=O 对 Fe(IV)=O 的氢原子提取,以及羟基对底物 N 自由基的回弹。H/e 随机添加到 Fe 侧(机理 C)可过渡到机理 B,从而防止酶失活。另外两种竞争性机制,包括直接 O-O 键解离(机理 A)和 HO 作为共底物的添加(机理 D)已被排除。