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二核铁结构域催化 SznF 酶的 N-羟化作用的机制研究:链脲佐菌素合成中的关键部分。

Mechanistic Insights into the N-Hydroxylations Catalyzed by the Binuclear Iron Domain of SznF Enzyme: Key Piece in the Synthesis of Streptozotocin.

机构信息

Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 100081, China.

出版信息

Chemistry. 2024 Mar 15;30(16):e202303845. doi: 10.1002/chem.202303845. Epub 2024 Jan 29.

Abstract

SznF, a member of the emerging family of heme-oxygenase-like (HO-like) di-iron oxidases and oxygenases, employs two distinct domains to catalyze the conversion of N-methyl-L-arginine (L-NMA) into N-nitroso-containing product, which can subsequently be transformed into streptozotocin. Using unrestricted density functional theory (UDFT) with the hybrid functional B3LYP, we have mechanistically investigated the two sequential hydroxylations of L-NMA catalyzed by SznF's binuclear iron central domain. Mechanism B primarily involves the O-O bond dissociation, forming Fe(IV)=O, induced by the H/e introduction to the Fe side of μ-1,2-peroxo-Fe(III/III), the substrate hydrogen abstraction by Fe(IV)=O, and the hydroxyl rebound to the substrate N radical. The stochastic addition of H/e to the Fe side (mechanism C) can transition to mechanism B, thereby preventing enzyme deactivation. Two other competing mechanisms, involving the direct O-O bond dissociation (mechanism A) and the addition of HO as a co-substrate (mechanism D), have been ruled out.

摘要

SznF 是新兴的血红素加氧酶样(HO-like)双铁氧化酶和加氧酶家族的成员之一,它采用两个不同的结构域来催化 N-甲基-L-精氨酸(L-NMA)转化为含有亚硝酰基的产物,随后该产物可转化为链脲佐菌素。本研究采用含混合泛函 B3LYP 的非限制密度泛函理论(UDFT),对 SznF 双核铁中心结构域催化的 L-NMA 的两次连续羟化作用进行了机理研究。机理 B 主要涉及 O-O 键的解离,在 μ-1,2-过氧-Fe(III/III)的 Fe 侧引入 H/e 后形成 Fe(IV)=O,Fe(IV)=O 对 Fe(IV)=O 的氢原子提取,以及羟基对底物 N 自由基的回弹。H/e 随机添加到 Fe 侧(机理 C)可过渡到机理 B,从而防止酶失活。另外两种竞争性机制,包括直接 O-O 键解离(机理 A)和 HO 作为共底物的添加(机理 D)已被排除。

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