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荧光相关光谱法测量 RNA 双链杂交。

RNA Double-Helix Hybridization Measured by Fluorescence Correlation Spectroscopy.

机构信息

Institute for Biochemistry and Molecular Biology, Department of Chemistry, Faculty of Mathematics, Computer Science and Natural Science, Hamburg University, Hamburg, Germany.

Institute for Microbiology, Faculty for Mathematics and Natural Science, University Kiel, Kiel, Germany.

出版信息

Methods Mol Biol. 2024;2741:175-181. doi: 10.1007/978-1-0716-3565-0_9.

DOI:10.1007/978-1-0716-3565-0_9
PMID:38217653
Abstract

RNA double-strand hybridization is a key player in gene expression regulation. Single-stranded RNA of up to 300 nucleotides forms Watson-Crick base pairs with complementary messenger RNA. Fluorescence-based single-molecule methods allow to study RNA-RNA interaction under physiological conditions. Here is described, how the dissociation constant of RNA double strands can be determined by applying fluorescence correlation spectroscopy.

摘要

RNA 双链杂交是基因表达调控的关键因素。多达 300 个核苷酸的单链 RNA 与互补的信使 RNA 形成 Watson-Crick 碱基对。基于荧光的单分子方法允许在生理条件下研究 RNA-RNA 相互作用。本文描述了如何通过应用荧光相关光谱法来确定 RNA 双链的离解常数。

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本文引用的文献

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A new role for SR1 from Bacillus subtilis: regulation of sporulation by inhibition of kinA translation.枯草芽孢杆菌 SR1 的新作用:通过抑制 kinA 翻译来调节孢子形成。
Nucleic Acids Res. 2021 Oct 11;49(18):10589-10603. doi: 10.1093/nar/gkab747.
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IntaRNA 2.0: enhanced and customizable prediction of RNA-RNA interactions.IntaRNA 2.0:增强和可定制的 RNA-RNA 相互作用预测。
Nucleic Acids Res. 2017 Jul 3;45(W1):W435-W439. doi: 10.1093/nar/gkx279.
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The noncoding RNA revolution-trashing old rules to forge new ones.非编码 RNA 革命——打破旧规则,开创新局面。
Cell. 2014 Mar 27;157(1):77-94. doi: 10.1016/j.cell.2014.03.008.
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Molecular mechanisms of RNA interference.RNA 干扰的分子机制。
Annu Rev Biophys. 2013;42:217-39. doi: 10.1146/annurev-biophys-083012-130404.
5
A fluorescence correlation spectroscopy-based enzyme assay for human Dicer.基于荧光相关光谱的人源 Dicer 酶活性分析方法。
Biol Chem. 2012 Mar;393(3):187-93. doi: 10.1515/hsz-2011-0202.
6
RNA dimerization monitored by fluorescence correlation spectroscopy.荧光相关光谱法监测 RNA 二聚化。
Eur Biophys J. 2011 Aug;40(8):907-21. doi: 10.1007/s00249-011-0701-8. Epub 2011 Jun 15.
7
Fluorophore binding aptamers as a tool for RNA visualization.荧光团结合适配体作为RNA可视化的工具。
Biophys J. 2009 May 6;96(9):3703-7. doi: 10.1016/j.bpj.2009.01.041.
8
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Anal Biochem. 2009 Jun 1;389(1):52-62. doi: 10.1016/j.ab.2009.03.018. Epub 2009 Mar 20.
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Curr Pharm Biotechnol. 2004 Apr;5(2):135-54. doi: 10.2174/1389201043376913.