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从临床文本中获取个体层面的社会决定因素。

Capturing Individual-level Social Determinants from Clinical Text.

机构信息

IBM Research, Yorktown Heights, NY.

出版信息

AMIA Annu Symp Proc. 2024 Jan 11;2023:484-493. eCollection 2023.

PMID:38222363
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10785909/
Abstract

Knowledge of social determinants of health (SDOH), which refer to nonmedical factors influencing health outcomes, can help providers improve patient care. However, SDOH are often documented in unstructured notes, making them more inaccessible. Although previous works have attempted SDOH extraction from clinical notes, most efforts defined SDOH more narrowly and focused on the note's social history (SH) section, where social factors are traditionally documented. Here, we introduce a new SDOH dataset covering a broad range of SDOH content that is annotated over entire notes. We characterize what, where, and how SDOH information is documented in clinical text, present baseline systems using a token classification and generative approach, and investigate whether training only on the SH section can effectively extract SDOH from the entire note. The final dataset, consisting of 2,007 annotations covering 7 open-ended SDOH domains over 500 notes, will be publicly released to encourage further research in this area.

摘要

健康的社会决定因素(SDOH)知识,是指影响健康结果的非医疗因素,它可以帮助提供者改善患者护理。然而,SDOH 通常记录在非结构化的笔记中,这使得它们更难以获取。尽管之前的工作已经尝试从临床笔记中提取 SDOH,但大多数努力都将 SDOH 定义得更狭义,并且专注于记录社会因素的传统的笔记的社会历史(SH)部分。在这里,我们引入了一个新的 SDOH 数据集,涵盖了广泛的 SDOH 内容,并对整个笔记进行了注释。我们描述了 SDOH 信息在临床文本中是如何记录的,包括记录的内容、位置和方式,使用基于标记的分类和生成方法展示了基线系统,并研究了仅在 SH 部分进行训练是否可以有效地从整个笔记中提取 SDOH。最终数据集由 2007 个注释组成,涵盖了 500 多个笔记中的 7 个开放的 SDOH 领域,将公开发布以鼓励该领域的进一步研究。

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2
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本文引用的文献

1
Toward Understanding Clinical Context of Medication Change Events in Clinical Narratives.理解临床叙事中药物变更事件的临床背景。
AMIA Annu Symp Proc. 2022 Feb 21;2021:833-842. eCollection 2021.
2
Reducing Physicians' Cognitive Load During Chart Review: A Problem-Oriented Summary of the Patient Electronic Record.在病历回顾期间降低医生的认知负荷:患者电子病历的以问题为导向的总结。
AMIA Annu Symp Proc. 2022 Feb 21;2021:763-772. eCollection 2021.
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MIMIC-SBDH: A Dataset for Social and Behavioral Determinants of Health.MIMIC-SBDH:一个关于健康的社会和行为决定因素的数据集。
Proc Mach Learn Res. 2021 Aug;149:391-413.
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Extracting social determinants of health from electronic health records using natural language processing: a systematic review.利用自然语言处理从电子健康记录中提取健康的社会决定因素:系统评价。
J Am Med Inform Assoc. 2021 Nov 25;28(12):2716-2727. doi: 10.1093/jamia/ocab170.
5
Annotating social determinants of health using active learning, and characterizing determinants using neural event extraction.使用主动学习对健康的社会决定因素进行标注,并使用神经事件提取对决定因素进行特征描述。
J Biomed Inform. 2021 Jan;113:103631. doi: 10.1016/j.jbi.2020.103631. Epub 2020 Dec 5.
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Appl Clin Inform. 2020 Jan;11(1):172-181. doi: 10.1055/s-0040-1702214. Epub 2020 Mar 4.
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Towards the Inference of Social and Behavioral Determinants of Sexual Health: Development of a Gold-Standard Corpus with Semi-Supervised Learning.迈向性健康社会和行为决定因素的推断:利用半监督学习开发黄金标准语料库
AMIA Annu Symp Proc. 2018 Dec 5;2018:422-429. eCollection 2018.
8
Designing a medication timeline for patients and physicians.为患者和医生设计用药时间表。
J Am Med Inform Assoc. 2019 Feb 1;26(2):95-105. doi: 10.1093/jamia/ocy143.
9
Integrating Data On Social Determinants Of Health Into Electronic Health Records.将健康社会决定因素数据整合到电子健康记录中。
Health Aff (Millwood). 2018 Apr;37(4):585-590. doi: 10.1377/hlthaff.2017.1252.
10
Automated Extraction of Substance Use Information from Clinical Texts.从临床文本中自动提取物质使用信息。
AMIA Annu Symp Proc. 2015 Nov 5;2015:2121-30. eCollection 2015.