Department of Oral and Craniofacial Molecular Biology, School of Dentistry, Virginia Commonwealth University, Richmond, Virginia, USA.
Program in Microbiology and Immunology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
mBio. 2024 Feb 14;15(2):e0316823. doi: 10.1128/mbio.03168-23. Epub 2024 Jan 18.
YTH N6-methyladenosine RNA-binding protein F2 (YTHDF2) is a member of the YTH protein family that binds to N6-methyladenosine (m6A)-modified RNA, regulating RNA stability and restricting viral replication, including Epstein-Barr virus (EBV). PIAS1 is an E3 small ubiquitin-like modifier (SUMO) ligase known as an EBV restriction factor, but its role in YTHDF2 SUMOylation remains unclear. In this study, we investigated the functional regulation of YTHDF2 by PIAS1. We found that PIAS1 promotes the SUMOylation of YTHDF2 at three specific lysine residues (K281, K571, and K572). Importantly, PIAS1 synergizes with wild-type YTHDF2, but not a SUMOylation-deficient mutant, to limit EBV lytic replication. Mechanistically, YTHDF2 lacking SUMOylation exhibits reduced binding to EBV transcripts, leading to increased viral mRNA stability. Furthermore, PIAS1 mediates SUMOylation of YTHDF2's paralogs, YTHDF1 and YTHDF3, to restrict EBV replication. These results collectively uncover a unique mechanism whereby YTHDF family proteins control EBV replication through PIAS1-mediated SUMOylation, highlighting the significance of SUMOylation in regulating viral mRNA stability and EBV replication.IMPORTANCEm6A RNA modification pathway plays important roles in diverse cellular processes and viral life cycle. Here, we investigated the relationship between PIAS1 and the m6A reader protein YTHDF2, which is involved in regulating RNA stability by binding to m6A-modified RNA. We found that both the N-terminal and C-terminal regions of YTHDF2 interact with PIAS1. We showed that PIAS1 promotes the SUMOylation of YTHDF2 at three specific lysine residues. We also demonstrated that PIAS1 enhances the anti-EBV activity of YTHDF2. We further revealed that PIAS1 mediates the SUMOylation of other YTHDF family members, namely, YTHDF1 and YTHDF3, to limit EBV replication. These findings together illuminate an important regulatory mechanism of YTHDF proteins in controlling viral RNA decay and EBV replication through PIAS1-mediated SUMOylation.
YTH N6-甲基腺苷 RNA 结合蛋白 F2(YTHDF2)是 YTH 蛋白家族的一员,它与 N6-甲基腺苷(m6A)修饰的 RNA 结合,调节 RNA 的稳定性并限制病毒复制,包括 EBV。PIAS1 是一种 E3 小泛素样修饰酶(SUMO)连接酶,作为 EBV 限制因子而闻名,但它在 YTHDF2 SUMO 化中的作用尚不清楚。在这项研究中,我们研究了 PIAS1 对 YTHDF2 的功能调节。我们发现 PIAS1 促进 YTHDF2 在三个特定赖氨酸残基(K281、K571 和 K572)上的 SUMO 化。重要的是,PIAS1 与野生型 YTHDF2 协同作用,但与 SUMO 化缺陷突变体不协同,以限制 EBV 裂解复制。从机制上讲,缺乏 SUMO 化的 YTHDF2 与 EBV 转录本的结合减少,导致病毒 mRNA 稳定性增加。此外,PIAS1 介导 YTHDF2 及其同源物 YTHDF1 和 YTHDF3 的 SUMO 化,以限制 EBV 复制。这些结果共同揭示了一种独特的机制,即 YTHDF 家族蛋白通过 PIAS1 介导的 SUMO 化来控制 EBV 复制,突显了 SUMO 化在调节病毒 mRNA 稳定性和 EBV 复制中的重要性。