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安格斯肉牛育肥牛体重的宏微观遗传环境敏感性。

Macro- and micro-genetic environmental sensitivity of yearling weight in Angus beef cattle.

机构信息

School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia.

School of Environmental and Rural Science, University of New England, Armidale, NSW 2351, Australia.

出版信息

Animal. 2024 Feb;18(2):101068. doi: 10.1016/j.animal.2023.101068. Epub 2023 Dec 27.

Abstract

Australian beef cattle experience variable conditions, which may give rise to genotype-by-environment interactions depending on the genotypes' macro- and/or micro-genetic environmental sensitivity (GES). Macro-GES gives rise to genotype-by-environment interactions across definable and shared environments, while micro-GES causes heritable variation of phenotypes, e.g., the performance of progeny from one sire may be more variable than other sires. Yearling weight (YW) is a key trait in Australian Angus cattle that may be impacted by both macro- and micro-GES. Current models for genetic evaluation of YW attempt to account for macro-GES by fitting sire-by-herd interactions (S × H). Variation in micro-GES had not yet been estimated for YW in Australian Angus. The aim of this study was to estimate genetic variation due to macro- and micro-GES in YW of Australian Angus cattle. A reaction norm with contemporary group effects as the environmental covariate was fitted either as an alternative to or in combination with a random S × H effect to account for macro-GES. Double hierarchical generalised linear models (DHGLM), fitted as sire models, were used to estimate the genetic variance of the dispersion as a measure of micro-GES. Variation due to both macro- and micro-GES were found in YW. The variance of the slope of the reaction norm was 0.02-0.03 (SEs 0.00), while the S × H variance accounted for 7% of the phenotypic variance in all models. Results showed that both a random S × H effect and a reaction norm should be included to account for both macro-GES and the additional variation captured by an S × H effect. The heritability of the dispersion on the measurement scale ranged from 0.06 to 0.10 (SEs 0.00) depending on which model was used. It should therefore be possible to alter both macro- and micro-GES of YW in Australian Angus through selection. However, care should be taken to ensure an appropriate data structure when including sire-by-herd interactions in the mean part of a DHGLM; otherwise, it can cause biased estimates of micro-GES.

摘要

澳大利亚肉牛经历着不同的环境条件,这可能导致基因型与环境互作,具体取决于基因型的宏观和/或微观遗传环境敏感性(GES)。宏观-GES 导致可定义和共享环境中的基因型与环境互作,而微观-GES 导致表型的遗传可变性,例如,一个 sire 的后代的表现可能比其他 sire 的后代更具变异性。周岁体重(YW)是澳大利亚安格斯牛的一个关键性状,可能受到宏观和微观 GES 的影响。目前,用于 YW 遗传评估的模型试图通过拟合 sire-by-herd 互作(S × H)来解释宏观-GES。在澳大利亚安格斯牛中,YW 的微观-GES 变化尚未得到估计。本研究旨在估计澳大利亚安格斯牛 YW 的宏观和微观 GES 引起的遗传变异。采用当代群体效应作为环境协变量的反应规范拟合,或者替代或与随机 S × H 效应相结合,以解释宏观-GES。作为 sire 模型拟合的双层次广义线性模型(DHGLM)用于估计作为微观-GES 度量的分散遗传方差。在所有模型中,发现 YW 存在宏观和微观 GES 引起的变异。反应规范斜率的方差为 0.02-0.03(SEs 0.00),而 S × H 方差占所有模型表型方差的 7%。结果表明,为了解释宏观-GES 和 S × H 效应所捕获的额外变异,应该同时包含随机 S × H 效应和反应规范。在测量尺度上,分散的遗传力范围从 0.06 到 0.10(SEs 0.00),具体取决于使用的模型。因此,通过选择,有可能改变澳大利亚安格斯牛 YW 的宏观和微观 GES。然而,在将 sire-by-herd 互作包含在 DHGLM 的均值部分时,应注意确保适当的数据结构;否则,可能会导致对微观-GES 的有偏估计。

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