Key Laboratory of Spectral Imaging Technology CAS, Xi'an Institute of Optics and Precision Mechanics, Chinese Academy of Sciences, Xi'an 710119, China.
Xi'an Key Laboratory for Biomedical Spectroscopy, Xi'an 710119, China.
Sensors (Basel). 2024 Jan 13;24(2):507. doi: 10.3390/s24020507.
To meet the demand for rapid bacterial detection in clinical practice, this study proposed a joint determination model based on spectral database matching combined with a deep learning model for the determination of positive-negative bacterial infection in directly smeared urine samples. Based on a dataset of 8124 urine samples, a standard hyperspectral database of common bacteria and impurities was established. This database, combined with an automated single-target extraction, was used to perform spectral matching for single bacterial targets in directly smeared data. To address the multi-scale features and the need for the rapid analysis of directly smeared data, a multi-scale buffered convolutional neural network, MBNet, was introduced, which included three convolutional combination units and four buffer units to extract the spectral features of directly smeared data from different dimensions. The focus was on studying the differences in spectral features between positive and negative bacterial infection, as well as the temporal correlation between positive-negative determination and short-term cultivation. The experimental results demonstrate that the joint determination model achieved an accuracy of 97.29%, a Positive Predictive Value (PPV) of 97.17%, and a Negative Predictive Value (NPV) of 97.60% in the directly smeared urine dataset. This result outperformed the single MBNet model, indicating the effectiveness of the multi-scale buffered architecture for global and large-scale features of directly smeared data, as well as the high sensitivity of spectral database matching for single bacterial targets. The rapid determination solution of the whole process, which combines directly smeared sample preparation, joint determination model, and software analysis integration, can provide a preliminary report of bacterial infection within 10 min, and it is expected to become a powerful supplement to the existing technologies of rapid bacterial detection.
为满足临床实践中对快速细菌检测的需求,本研究提出了一种基于光谱数据库匹配结合深度学习模型的联合测定模型,用于直接涂片尿液样本中阳性-阴性细菌感染的测定。基于 8124 个尿液样本数据集,建立了常见细菌和杂质的标准高光谱数据库。该数据库结合自动化单目标提取,用于对直接涂片数据中的单个细菌目标进行光谱匹配。为了解决多尺度特征和直接涂片数据快速分析的需求,引入了多尺度缓冲卷积神经网络 MBNet,它包括三个卷积组合单元和四个缓冲单元,从不同维度提取直接涂片数据的光谱特征。重点研究了阳性-阴性细菌感染之间的光谱特征差异,以及阳性-阴性判定与短期培养之间的时间相关性。实验结果表明,联合测定模型在直接涂片尿液数据集上的准确率为 97.29%,阳性预测值(PPV)为 97.17%,阴性预测值(NPV)为 97.60%。这一结果优于单一的 MBNet 模型,表明多尺度缓冲架构对于直接涂片数据的全局和大规模特征的有效性,以及光谱数据库匹配对于单个细菌目标的高灵敏度。整个过程的快速测定解决方案,结合直接涂片样本制备、联合测定模型和软件分析集成,可以在 10 分钟内提供细菌感染的初步报告,有望成为现有快速细菌检测技术的有力补充。