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两种不同的调控系统控制着……中的嗜铁素生物合成。

Two Distinct Regulatory Systems Control Pulcherrimin Biosynthesis in .

作者信息

Fernandez Nicolas L, Simmons Lyle A

机构信息

Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, MI 48109.

出版信息

bioRxiv. 2024 Jan 4:2024.01.03.574033. doi: 10.1101/2024.01.03.574033.

DOI:10.1101/2024.01.03.574033
PMID:38260623
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10802322/
Abstract

Regulation of transcription is a fundamental process that allows bacteria to respond to external stimuli with appropriate timing and magnitude of response. In the soil bacterium , transcriptional regulation is at the core of developmental processes needed for cell survival. Gene expression in cells transitioning from exponential phase to stationary phase is under the control of a group of transcription factors called transition state regulators (TSRs). TSRs influence numerous developmental processes including the decision between biofilm formation and motility, genetic competence, and sporulation, but the extent to which TSRs influence bacterial physiology remains to be fully elucidated. Here, we demonstrate two TSRs, ScoC and AbrB, along with the MerR-family transcription factor PchR negatively regulate production of the iron chelator pulcherrimin in . Genetic analysis of the relationship between the three transcription factors indicate that all are necessary to limit pulcherrimin production during exponential phase and influence the rate and total amount of pulcherrimin produced. Similarly, expression of the pulcherrimin biosynthesis gene was found to be under control of ScoC, AbrB, and PchR and correlated with the amount of pulcherrimin produced by each background. Lastly, our in vitro data indicate a weak direct role for ScoC in controlling pulcherrimin production along with AbrB and PchR. The layered regulation by two distinct regulatory systems underscores the important, and somewhat enigmatic, role for pulcherrimin in physiology.

摘要

转录调控是一个基本过程,它使细菌能够以适当的时间和响应强度对外界刺激做出反应。在土壤细菌中,转录调控是细胞存活所需发育过程的核心。从指数生长期过渡到稳定期的细胞中的基因表达受一组称为过渡状态调节因子(TSR)的转录因子控制。TSR影响许多发育过程,包括生物膜形成和运动性、遗传感受态以及孢子形成之间的抉择,但TSR对细菌生理学的影响程度仍有待充分阐明。在这里,我们证明了两个TSR,即ScoC和AbrB,以及MerR家族转录因子PchR对土壤杆菌中铁螯合剂铁载体的产生具有负调控作用。对这三种转录因子之间关系的遗传分析表明,所有这些转录因子对于在指数生长期限制铁载体的产生都是必需的,并且会影响铁载体产生的速率和总量。同样,发现铁载体生物合成基因的表达受ScoC、AbrB和PchR的控制,并且与每个背景下产生的铁载体量相关。最后,我们的体外数据表明ScoC与AbrB和PchR一起在控制铁载体产生方面具有微弱的直接作用。由两个不同调节系统进行的分层调控突出了铁载体在土壤杆菌生理学中的重要且有些神秘的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/8c48190fde7d/nihpp-2024.01.03.574033v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/1f47f3dfe601/nihpp-2024.01.03.574033v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/2f211021eb4e/nihpp-2024.01.03.574033v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/b53bf8a0c361/nihpp-2024.01.03.574033v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/6427f82ea5fb/nihpp-2024.01.03.574033v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/047393e209fe/nihpp-2024.01.03.574033v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/8c48190fde7d/nihpp-2024.01.03.574033v1-f0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/1f47f3dfe601/nihpp-2024.01.03.574033v1-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/2f211021eb4e/nihpp-2024.01.03.574033v1-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/b53bf8a0c361/nihpp-2024.01.03.574033v1-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/6427f82ea5fb/nihpp-2024.01.03.574033v1-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/047393e209fe/nihpp-2024.01.03.574033v1-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a78b/10802322/8c48190fde7d/nihpp-2024.01.03.574033v1-f0006.jpg

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本文引用的文献

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2
Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks.环境依赖的上位性增加了基因调控网络的表型多样性。
Sci Adv. 2023 May 24;9(21):eadf1773. doi: 10.1126/sciadv.adf1773.
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Pulcherriminic acid modulates iron availability and protects against oxidative stress during microbial interactions.
美丽棒曲霉素通过调节铁的可用性和抵御微生物互作过程中的氧化应激来发挥作用。
Nat Commun. 2023 May 3;14(1):2536. doi: 10.1038/s41467-023-38222-0.
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Dps Is a Universally Conserved Dual-Action DNA-Binding and Ferritin Protein.Dps 是一种普遍存在的具有双重作用的 DNA 结合蛋白和铁蛋白。
J Bacteriol. 2022 May 17;204(5):e0003622. doi: 10.1128/jb.00036-22. Epub 2022 Apr 5.
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Inexpensive Apparatus for High-Quality Imaging of Microbial Growth on Agar Plates.用于琼脂平板上微生物生长高质量成像的廉价仪器。
Front Microbiol. 2021 Jun 30;12:689476. doi: 10.3389/fmicb.2021.689476. eCollection 2021.
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A two-step PCR assembly for construction of gene variants across large mutational distances.一种用于构建跨越较大突变距离的基因变体的两步PCR组装方法。
Biol Methods Protoc. 2021 Apr 2;6(1):bpab007. doi: 10.1093/biomethods/bpab007. eCollection 2021.
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Nucleic Acids Res. 2020 Jun 4;48(10):5332-5348. doi: 10.1093/nar/gkaa266.
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Proc Natl Acad Sci U S A. 2019 Jul 2;116(27):13553-13562. doi: 10.1073/pnas.1903982116. Epub 2019 Jun 19.
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