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比林斯水库系统中细菌群落的时间格局。

Temporal patterns of bacterial communities in the Billings Reservoir system.

机构信息

Post-Graduation Program in Translational Medicine, Department of Medicine, Federal University of São Paulo, São Paulo, 04021-001, Brazil.

Laboratory of Dermatology and Immunodeficiency, Department of Dermatology LIM 56, Faculty of Medicine, University of São Paulo, São Paulo, 05403-000, Brazil.

出版信息

Sci Rep. 2024 Jan 24;14(1):2062. doi: 10.1038/s41598-024-52432-6.

Abstract

In this study, high-throughput sequencing of 16S rRNA amplicons and predictive PICRUSt functional profiles were used to perform a comprehensive analysis of the temporal bacterial distribution and metabolic functions of 19 bimonthly samples collected from July 2019 to January 2020 in the surface water of Billings Reservoir, São Paulo. The results revealed that most of the bacterial 16S rRNA gene sequences belonged to Cyanobacteria and Proteobacteria, which accounted for more than 58% of the total bacterial abundance. Species richness and evenness indices were highest in surface water from summer samples (January 2020), followed by winter (July 2019) and spring samples (September and November 2019). Results also showed that the highest concentrations of sulfate (SO), phosphate (P), ammonia (NH), and nitrate (NO) were detected in November 2019 and January 2020 compared with samples collected in July and September 2019 (P < 0.05). Principal component analysis suggests that physicochemical factors such as pH, DO, temperature, and NH are the most important environmental factors influencing spatial and temporal variations in the community structure of bacterioplankton. At the genus level, 18.3% and 9.9% of OTUs in the July and September 2019 samples, respectively, were assigned to Planktothrix, while 14.4% and 20% of OTUs in the November 2019 and January 2020 samples, respectively, were assigned to Microcystis. In addition, PICRUSt metabolic analysis revealed increasing enrichment of genes in surface water associated with multiple metabolic processes rather than a single regulatory mechanism. This is the first study to examine the temporal dynamics of bacterioplankton and its function in Billings Reservoir during the winter, spring, and summer seasons. The study provides comprehensive reference information on the effects of an artificial habitat on the bacterioplankton community that can be used to interpret the results of studies to evaluate and set appropriate treatment targets.

摘要

在这项研究中,使用高通量 16S rRNA 扩增子测序和预测 PICRUSt 功能谱对 2019 年 7 月至 2020 年 1 月期间从巴西圣保罗比林斯水库采集的 19 个双月样本的表层水的细菌分布和代谢功能进行了全面分析。结果表明,大多数细菌 16S rRNA 基因序列属于蓝藻和变形菌门,它们占总细菌丰度的 58%以上。物种丰富度和均匀度指数在夏季(2020 年 1 月)样本中最高,其次是冬季(2019 年 7 月)和春季(2019 年 9 月和 11 月)样本。结果还表明,与 2019 年 7 月和 9 月采集的样本相比,2019 年 11 月和 2020 年 1 月的水样中硫酸盐(SO)、磷酸盐(P)、氨(NH)和硝酸盐(NO)的浓度最高(P < 0.05)。主成分分析表明,pH、DO、温度和 NH 等理化因素是影响浮游细菌群落结构时空变化的最重要环境因素。在属水平上,2019 年 7 月和 9 月样本中分别有 18.3%和 9.9%的 OTUs 被分配到束丝藻属,而 2019 年 11 月和 2020 年 1 月样本中分别有 14.4%和 20%的 OTUs 被分配到微囊藻属。此外,PICRUSt 代谢分析显示,与单个调控机制相比,表层水中与多种代谢过程相关的基因富集度增加。这是首次研究冬季、春季和夏季比林斯水库浮游细菌的时间动态及其功能。该研究为人工生境对浮游细菌群落的影响提供了全面的参考信息,可用于解释评估和设定适当处理目标的研究结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e862/10808195/86400a9cba4c/41598_2024_52432_Fig1_HTML.jpg

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