Key Laboratory of Zoological Systematics and Application of Hebei Province, College of Life Sciences, Hebei University, Baoding, China.
Institute of Life Science and Green Development, Hebei University, Baoding, China.
Arch Insect Biochem Physiol. 2024 Jan;115(1):e22070. doi: 10.1002/arch.22070.
DNA barcoding is a useful addition to the traditional morphology-based taxonomy. A ca. 650 bp fragment of the 5' end of mitochondrial cytochrome c oxidase subunit I (hereafter COI-5P) DNA barcoding was sued as a practical tool for Gampsocleis species identification. DNA barcodes from 889 specimens belonging to 8 putative Gampsocleis species was analyzed, including 687 newly generated DNA barcodes. These barcode sequences were clustered/grouped into Operational Taxonomic Units (OTUs) using the criteria of five algorithms, namely Barcode Index Number (BIN) System, Assemble Species by Automatic Partitioning (ASAP), a Java program uses an explicit, determinate algorithm to define Molecular Operational Taxonomic Unit (jMOTU), Generalized Mixed Yule Coalescent (GMYC), and Bayesian implementation of the Poisson Tree Processes model (bPTP). The Taxon ID Tree grouped sequences of morphospecies and almost all MOTUs in distinct nonoverlapping clusters. Both long- and short-winged Gampsocleis species are reciprocally monophyletic in the Taxon ID Tree. In BOLD, 889 barcode sequences are assigned to 17 BINs. The algorithms ASAP, jMOTU, bPTP and GMYC clustered the barcode sequences into 6, 13, 10, and 23 MOTUs, respectively. BIN, ASAP, and bPTP algorithm placed three long-winged species, G. sedakovii, G. sinensis and G. ussuriensis within the same MOTU. All species delimitation algorithms split two short-winged species,G. fletcheri and G. gratiosa into at least two MOTUs each, except for ASAP algorithm. More detailed molecular and morphological integrative studies are required to clarify the status of these MOTUs in the future.
DNA 条形码是传统形态分类学的有用补充。使用线粒体细胞色素 c 氧化酶亚基 I(简称 COI-5P)的约 650bp 片段作为 DNA 条形码,用于 Gampsocleis 物种鉴定的实用工具。对 8 个假定的 Gampsocleis 物种的 889 个标本的 DNA 条形码进行了分析,其中包括 687 个新生成的 DNA 条形码。这些条形码序列使用 5 种算法(条形码索引编号系统、自动分区的物种组装、使用明确确定算法定义分子操作分类单元的 Java 程序、广义混合 Yule 合并和贝叶斯实现泊松树过程模型)的标准聚类/分组为操作分类单元(OTUs)。分类单元 ID 树将形态种的序列和几乎所有 MOTUs 分组到不同的非重叠聚类中。长翅和短翅 Gampsocleis 物种在分类单元 ID 树中都是相互单系的。在 BOLD 中,889 个条形码序列被分配到 17 个 BIN 中。ASAP、jMOTU、bPTP 和 GMYC 算法分别将条形码序列聚类为 6、13、10 和 23 个 MOTUs。BIN、ASAP 和 bPTP 算法将三个长翅物种 G. sedakovii、G. sinensis 和 G. ussuriensis 置于同一个 MOTU 中。除 ASAP 算法外,所有物种界定算法都将两个短翅物种 G. fletcheri 和 G. gratiosa 分别分为至少两个 MOTUs。未来需要更详细的分子和形态综合研究来澄清这些 MOTUs 的状况。