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高维分位数中介分析及其在母婴队列研究中的应用。

High-dimensional quantile mediation analysis with application to a birth cohort study of mother-newborn pairs.

机构信息

Center for Applied Mathematics, Tianjin University, Tianjin 300072, China.

Department of Population, Family and Reproductive Health, Center On the Early Life Origins of Disease, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD 21205, United States.

出版信息

Bioinformatics. 2024 Feb 1;40(2). doi: 10.1093/bioinformatics/btae055.

DOI:10.1093/bioinformatics/btae055
PMID:38290773
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10873903/
Abstract

MOTIVATION

There has been substantial recent interest in developing methodology for high-dimensional mediation analysis. Yet, the majority of mediation statistical methods lean heavily on mean regression, which limits their ability to fully capture the complex mediating effects across the outcome distribution. To bridge this gap, we propose a novel approach for selecting and testing mediators throughout the full range of the outcome distribution spectrum.

RESULTS

The proposed high-dimensional quantile mediation model provides a comprehensive insight into how potential mediators impact outcomes via their mediation pathways. This method's efficacy is demonstrated through extensive simulations. The study presents a real-world data application examining the mediating effects of DNA methylation on the relationship between maternal smoking and offspring birthweight.

AVAILABILITY AND IMPLEMENTATION

Our method offers a publicly available and user-friendly function qHIMA(), which can be accessed through the R package HIMA at https://CRAN.R-project.org/package=HIMA.

摘要

动机

最近人们对开发高维中介分析方法产生了浓厚的兴趣。然而,大多数中介统计方法严重依赖于均值回归,这限制了它们充分捕捉整个结果分布中复杂中介效应的能力。为了弥补这一差距,我们提出了一种新的方法,用于在整个结果分布范围内选择和测试中介变量。

结果

所提出的高维分位数中介模型提供了一个全面的视角,了解潜在的中介变量如何通过其中介途径影响结果。该方法通过广泛的模拟进行了验证。该研究通过一个实际数据应用案例,检验了 DNA 甲基化对母亲吸烟与子女出生体重之间关系的中介效应。

可用性和实现

我们的方法提供了一个公开可用且用户友好的函数 qHIMA(),可以通过 R 包 HIMA 在 https://CRAN.R-project.org/package=HIMA 上访问。

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本文引用的文献

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Boston Birth Cohort profile: rationale and study design.波士顿出生队列简介:基本原理与研究设计
Precis Nutr. 2022 Aug 18;1(2):e00011. doi: 10.1097/PN9.0000000000000011. eCollection 2022 Sep.
2
Large-Scale Hypothesis Testing for Causal Mediation Effects with Applications in Genome-wide Epigenetic Studies.因果中介效应的大规模假设检验及其在全基因组表观遗传学研究中的应用
J Am Stat Assoc. 2022;117(537):67-81. doi: 10.1080/01621459.2021.1914634. Epub 2021 May 19.
3
HIMA2: high-dimensional mediation analysis and its application in epigenome-wide DNA methylation data.
HIMA2:高维中介分析及其在全基因组 DNA 甲基化数据中的应用。
BMC Bioinformatics. 2022 Jul 25;23(1):296. doi: 10.1186/s12859-022-04748-1.
4
A Review of High-Dimensional Mediation Analyses in DNA Methylation Studies.高维中介分析在 DNA 甲基化研究中的应用综述
Methods Mol Biol. 2022;2432:123-135. doi: 10.1007/978-1-0716-1994-0_10.
5
A multiple-testing procedure for high-dimensional mediation hypotheses.一种用于高维中介假设的多重检验程序。
J Am Stat Assoc. 2022;117(537):198-213. doi: 10.1080/01621459.2020.1765785. Epub 2020 Jun 24.
6
Mediation analysis for survival data with high-dimensional mediators.高维中介变量生存数据分析的中介分析。
Bioinformatics. 2021 Nov 5;37(21):3815-3821. doi: 10.1093/bioinformatics/btab564.
7
Statistical methods for mediation analysis in the era of high-throughput genomics: Current successes and future challenges.高通量基因组学时代中介分析的统计方法:当前的成功与未来的挑战。
Comput Struct Biotechnol J. 2021 May 26;19:3209-3224. doi: 10.1016/j.csbj.2021.05.042. eCollection 2021.
8
Testing for mediation effect with application to human microbiome data.人类微生物组数据中介效应检验及应用
Stat Biosci. 2021 Jul;13(2):313-328. doi: 10.1007/s12561-019-09253-3. Epub 2019 Jul 27.
9
DNA methylation mediates the effect of maternal smoking on offspring birthweight: a birth cohort study of multi-ethnic US mother-newborn pairs.DNA 甲基化介导了母亲吸烟对后代出生体重的影响:一项对美国多民族母婴队列的研究。
Clin Epigenetics. 2021 Mar 4;13(1):47. doi: 10.1186/s13148-021-01032-6.
10
Mediation effect selection in high-dimensional and compositional microbiome data.高维组合微生物组数据中的中介效应选择。
Stat Med. 2021 Feb 20;40(4):885-896. doi: 10.1002/sim.8808. Epub 2020 Nov 17.