Plaugher Daniel, Murrugarra David
Department of Toxicology and Cancer Biology, University of Kentucky.
Department of Mathematics, University of Kentucky.
bioRxiv. 2024 May 22:2024.01.27.577546. doi: 10.1101/2024.01.27.577546.
There is increasing evidence that biological systems are modular in both structure and function. Complex biological signaling networks such as gene regulatory networks (GRNs) are proving to be composed of subcategories that are interconnected and hierarchically ranked. These networks contain highly dynamic processes that ultimately dictate cellular function over time, as well as influence phenotypic fate transitions. In this work, we use a stochastic multicellular signaling network of pancreatic cancer (PC) to show that the variance in topological rankings of the most phenotypically influential modules implies a strong relationship between structure and function. We further show that induction of mutations alters the modular structure, which analogously influences the aggression and controllability of the disease . We finally present evidence that the impact and location of mutations with respect to PC modular structure directly corresponds to the efficacy of single agent treatments , because topologically deep mutations require deep targets for control.
越来越多的证据表明,生物系统在结构和功能上都是模块化的。复杂的生物信号网络,如基因调控网络(GRN),正被证明是由相互连接且层次分明的子类别组成。这些网络包含高度动态的过程,这些过程最终决定细胞随时间的功能,并影响表型命运转变。在这项工作中,我们使用胰腺癌(PC)的随机多细胞信号网络来表明,最具表型影响力模块的拓扑排名差异意味着结构与功能之间存在紧密关系。我们进一步表明,突变的诱导会改变模块化结构,这类似地影响疾病的侵袭性和可控性。我们最终提供证据表明,与PC模块化结构相关的突变的影响和位置直接对应于单药治疗的疗效,因为拓扑深度突变需要深度靶点来控制。