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高效有丝分裂检测:利用预训练的更快 R-CNN 和细胞级分类。

Efficient mitosis detection: leveraging pre-trained faster R-CNN and cell-level classification.

机构信息

Centre For Artificial Intelligence, TKM College of Engineering, Karicode, Kollam, 691005, Kerala, India.

Department of Electrical and Electronics Engineering, TKM College of Engineering, Karicode, Kollam, 691005, Kerala, India.

出版信息

Biomed Phys Eng Express. 2024 Feb 15;10(2). doi: 10.1088/2057-1976/ad262f.

DOI:10.1088/2057-1976/ad262f
PMID:38357907
Abstract

The assessment of mitotic activity is an integral part of the comprehensive evaluation of breast cancer pathology. Understanding the level of tumor dissemination is essential for assessing the severity of the malignancy and guiding appropriate treatment strategies. A pathologist must manually perform the intricate and time-consuming task of counting mitoses by examining biopsy slices stained with Hematoxylin and Eosin (H&E) under a microscope. Mitotic cells can be challenging to distinguish in H&E-stained sections due to limited available datasets and similarities among mitotic and non-mitotic cells. Computer-assisted mitosis detection approaches have simplified the whole procedure by selecting, detecting, and labeling mitotic cells. Traditional detection strategies rely on image processing techniques that apply custom criteria to distinguish between different aspects of an image. Additionally, the automatic feature extraction from histopathology images that exhibit mitosis using neural networks.Additionally, the possibility of automatically extracting features from histopathological images using deep neural networks was investigated. This study examines mitosis detection as an object detection problem using multiple neural networks. From a medical standpoint, mitosis at the tissue level was also investigated utilising pre-trained Faster R-CNN and raw image data. Experiments were done on the MITOS-ATYPIA- 14 dataset and TUPAC16 dataset, and the results were compared to those of other methods described in the literature.

摘要

有丝分裂活性的评估是乳腺癌病理综合评估的一个组成部分。了解肿瘤播散程度对于评估恶性程度和指导适当的治疗策略至关重要。病理学家必须通过在显微镜下检查用苏木精和伊红(H&E)染色的活检切片来手动执行计数有丝分裂这一复杂且耗时的任务。由于可用数据集有限,以及有丝分裂细胞和非有丝分裂细胞之间的相似性,H&E 染色切片中的有丝分裂细胞难以区分。计算机辅助有丝分裂检测方法通过选择、检测和标记有丝分裂细胞简化了整个过程。传统的检测策略依赖于图像处理技术,这些技术应用自定义标准来区分图像的不同方面。此外,还研究了使用深度神经网络从表现有丝分裂的组织病理学图像中自动提取特征的可能性。本研究将有丝分裂检测视为使用多个神经网络的目标检测问题。从医学角度来看,还利用预训练的 Faster R-CNN 和原始图像数据研究了组织水平的有丝分裂。在 MITOS-ATYPIA-14 数据集和 TUPAC16 数据集上进行了实验,并将结果与文献中描述的其他方法进行了比较。

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