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用于聚焦癌症研究的定量基因表达分析的一组可靠参考基因的评估与标准化

Evaluation and normalization of a set of reliable reference genes for quantitative gene expression analysis in -focused cancer research.

作者信息

Özdemir Özgür Ülkü, Yurt Kübra, Pektaş Ayşe Nur, Berk Şeyda

机构信息

Department of Molecular Biology and Genetics, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey.

Advanced Technology Research and Application Center (CUTAM), Sivas Cumhuriyet University, Sivas, Turkey.

出版信息

Nucleosides Nucleotides Nucleic Acids. 2025;44(2):91-110. doi: 10.1080/15257770.2024.2317413. Epub 2024 Feb 15.

Abstract

Multiple signaling pathways have been discovered to play a role in aging and longevity, including the insulin/IGF-1 signaling system, AMPK pathway, TOR signaling, JNK pathway, and germline signaling. Mammalian serum and glucocorticoid-inducible kinase 1 (), which has been associated with various disorders including hypertension, obesity, and tumor growth, limits survival in by reducing DAF-16/FoxO activity while suppressing FoxO3 activity in human cell culture. provides significant protection for a number of genes associated with human cancer. The best known of these are the (mammalian ortholog ) and CEP-1 (mammalian ortholog ) genes. Therefore, in this study, we aimed to investigate the expression analyzes of , which is overexpressed in many types of mammalian cancer, in mutant lin-35 and to demonstrate the validation of reference genes in wild-type N2 and mutant lin-35 for -focused cancer research. To develop functional genomic studies in , we evaluated the expression stability of five candidate reference genes (, ) by quantitative real-time PCR using five algorithms (geNorm, NormFinder, Delta Ct method, BestKeeper, RefFinder) in N2 and lin-35 worms. According to our findings, and were effective in accurately normalizing the levels of gene expression in N2 and lin-35. and also displayed the most consistent expression patterns, therefore they were utilized to standardize expression level of . Furthermore, our results clearly showed that was upregulated in lin-35 worms compared to N2 worms. Our results highlight the importance of definitive validation using mostly expressed reference genes.

摘要

已发现多种信号通路在衰老和长寿过程中发挥作用,包括胰岛素/胰岛素样生长因子-1信号系统、AMPK通路、TOR信号、JNK通路和生殖系信号。哺乳动物血清和糖皮质激素诱导激酶1()与包括高血压、肥胖和肿瘤生长在内的各种疾病有关,它通过降低DAF-16/FoxO活性来限制线虫的寿命,同时在人类细胞培养中抑制FoxO3活性。为许多与人类癌症相关的基因提供了显著保护。其中最著名的是(哺乳动物直系同源基因)和CEP-1(哺乳动物直系同源基因)基因。因此,在本研究中,我们旨在研究在多种类型的哺乳动物癌症中过表达的在突变体lin-35中的表达分析,并证明在野生型N2和突变体lin-35中用于聚焦癌症研究的参考基因的有效性。为了开展线虫的功能基因组学研究,我们使用五种算法(geNorm、NormFinder、Delta Ct法、BestKeeper、RefFinder)通过定量实时PCR评估了五种候选参考基因(,)在N2和lin-35线虫中的表达稳定性。根据我们的研究结果,和在准确标准化N2和lin-35中的基因表达水平方面是有效的。和也表现出最一致的表达模式,因此它们被用于标准化的表达水平。此外,我们的结果清楚地表明,与N2线虫相比,在lin-35线虫中上调。我们的结果强调了使用表达最多的参考基因进行明确验证的重要性。

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