Ecobiomaterial Research Laboratory, School of Biological Sciences, Universiti Sains Malaysia, 11800 USM, Pulau Pinang, Penang, Malaysia.
Structural Biology Laboratory, Nara Institute of Science and Technology, 8916-5 Takayama, Ikoma, Nara, 630-0192, Japan.
Microb Cell Fact. 2024 Feb 15;23(1):52. doi: 10.1186/s12934-024-02329-w.
Among the polyhydroxyalkanoate (PHA), poly[(R)-3-hydroxybutyrate-co-(R)-3-hydroxyhexanoate] [P(3HB-co-3HHx)] is reported to closely resemble polypropylene and low-density polyethylene. Studies have shown that PHA synthase (PhaC) from mangrove soil (PhaC) is an efficient PhaC for P(3HB-co-3HHx) production and N-termini of PhaCs influence its substrate specificity, dimerization, granule morphology, and molecular weights of PHA produced. This study aims to further improve PhaC through N-terminal truncation.
The N-terminal truncated mutants of PhaC were constructed based on the information of the predicted secondary and tertiary structures using PSIPRED server and AlphaFold2 program, respectively. The N-terminal truncated PhaC mutants were evaluated in C. necator mutant PHB4 based on the cell dry weight, PHA content, 3HHx molar composition, molecular weights, and granule morphology of the PHA granules. The results showed that most transformants harbouring the N-terminal truncated PhaC showed a reduction in PHA content and cell dry weight except for PhaC G8. PhaC G8 and A27 showed an improved weight-average molecular weight (M) of PHA produced due to lower expression of the truncated PhaC. Transformants harbouring PhaC G8, A27, and T74 showed a reduction in the number of granules. PhaC G8 produced higher M PHA in mostly single larger PHA granules with comparable production as the full-length PhaC.
This research showed that N-terminal truncation had effects on PHA accumulation, substrate specificity, M, and granule morphology. This study also showed that N-terminal truncation of the amino acids that did not adopt any secondary structure can be an alternative to improve PhaCs for the production of PHA with higher M in mostly single larger granules.
在聚羟基脂肪酸酯(PHA)中,聚[(R)-3-羟基丁酸-co-(R)-3-羟基己酸酯] [P(3HB-co-3HHx)] 被报道与聚丙烯和低密度聚乙烯非常相似。研究表明,来自红树林土壤的 PHA 合酶(PhaC)[PhaC] 是生产 P(3HB-co-3HHx) 的有效 PhaC,并且 PhaC 的 N 末端影响其底物特异性、二聚化、颗粒形态和产生的 PHA 的分子量。本研究旨在通过 N 端截断进一步提高 PhaC。
根据 PSIPRED 服务器和 AlphaFold2 程序分别预测的二级和三级结构信息,构建了 PhaC 的 N 端截断突变体。根据细胞干重、PHA 含量、3HHx 摩尔组成、分子量和 PHA 颗粒的颗粒形态,在 C.necator 突变体 PHB4 中评估了 N 端截断的 PhaC 突变体。结果表明,除 PhaC G8 外,大多数携带 N 端截断 PhaC 的转化体的 PHA 含量和细胞干重都降低了。PhaC G8 和 A27 由于截断 PhaC 的表达较低,表现出产生的 PHA 重均分子量 (M) 的提高。携带 PhaC G8、A27 和 T74 的转化体的颗粒数量减少。PhaC G8 产生的 PHA 主要是单个较大 PHA 颗粒,具有可比的产量,M 值较高。
本研究表明,N 端截断对 PHA 积累、底物特异性、M 和颗粒形态有影响。本研究还表明,对不采用任何二级结构的氨基酸进行 N 端截断可以替代提高 PhaC,以生产主要是单个较大颗粒的更高 M 值的 PHA。