Suppr超能文献

从日本海面微层分离出的三株含有视紫红质的特定菌株的基因组序列草图。

Draft genome sequences of three rhodopsin possessing sp. strains, isolated from the sea surface microlayer in Japan.

作者信息

Takada Mako, Jiang Chunqi, Sugai Youta, Hasegawa-Takano Masumi, Fujiwara Takayoshi, Tsukamoto Yuya, Nakajima Yu, Nishimura Yosuke, Yoshizawa Susumu

机构信息

Atmosphere and Ocean Research Institute, The University of Tokyo, Kashiwa, Chiba, Japan.

Department of Natural Environmental Studies, Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa, Chiba, Japan.

出版信息

Microbiol Resour Announc. 2024 Mar 12;13(3):e0003824. doi: 10.1128/mra.00038-24. Epub 2024 Feb 16.

Abstract

Here, we present the draft genome sequences of three sp. strains containing microbial rhodopsins, isolated from the Japanese coastal sea surface microlayer, which is exposed to intense sunlight. This study will contribute to the understanding of the genus and the diversity of microbial rhodopsins.

摘要

在此,我们展示了从日本沿海海面微表层分离出的三株含有微生物视紫红质的 sp. 菌株的基因组序列草图,该微表层暴露于强烈阳光下。这项研究将有助于了解 属以及微生物视紫红质的多样性。

相似文献

1
Draft genome sequences of three rhodopsin possessing sp. strains, isolated from the sea surface microlayer in Japan.
Microbiol Resour Announc. 2024 Mar 12;13(3):e0003824. doi: 10.1128/mra.00038-24. Epub 2024 Feb 16.
4
Croceitalea marina sp. nov., isolated from marine particles of Yellow Sea, and emended description of the genera Croceitalea.
Int J Syst Evol Microbiol. 2017 Oct;67(10):4253-4259. doi: 10.1099/ijsem.0.002298. Epub 2017 Aug 31.
5
Draft Genome Sequence of Lewinella sp. Strain 4G2 Isolated from the Coastal Sea Surface Microlayer.
Genome Announc. 2016 Jul 28;4(4):e00754-16. doi: 10.1128/genomeA.00754-16.
6
Croceitalea litorea sp. nov., isolated from seashore sand.
Int J Syst Evol Microbiol. 2015 Dec;65(12):4563-4567. doi: 10.1099/ijsem.0.000613. Epub 2015 Sep 14.
8
Draft Genome Sequences of 11 Rhodopsin Gene-Containing Actinobacteria () from Saline Arid Habitats in the Central Asian Deserts.
Microbiol Resour Announc. 2023 May 17;12(5):e0136822. doi: 10.1128/mra.01368-22. Epub 2023 Apr 17.

本文引用的文献

2
fastp: an ultra-fast all-in-one FASTQ preprocessor.
Bioinformatics. 2018 Sep 1;34(17):i884-i890. doi: 10.1093/bioinformatics/bty560.
3
Solar-panel and parasol strategies shape the proteorhodopsin distribution pattern in marine Flavobacteriia.
ISME J. 2018 May;12(5):1329-1343. doi: 10.1038/s41396-018-0058-4. Epub 2018 Feb 6.
4
DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication.
Bioinformatics. 2018 Mar 15;34(6):1037-1039. doi: 10.1093/bioinformatics/btx713.
5
Croceitalea marina sp. nov., isolated from marine particles of Yellow Sea, and emended description of the genera Croceitalea.
Int J Syst Evol Microbiol. 2017 Oct;67(10):4253-4259. doi: 10.1099/ijsem.0.002298. Epub 2017 Aug 31.
6
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
7
Croceitalea litorea sp. nov., isolated from seashore sand.
Int J Syst Evol Microbiol. 2015 Dec;65(12):4563-4567. doi: 10.1099/ijsem.0.000613. Epub 2015 Sep 14.
8
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
9
Functional characterization of flavobacteria rhodopsins reveals a unique class of light-driven chloride pump in bacteria.
Proc Natl Acad Sci U S A. 2014 May 6;111(18):6732-7. doi: 10.1073/pnas.1403051111. Epub 2014 Mar 31.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验