Li Wei, Huang Limei, Qi Nana, Zhang Qinle, Qin Zailong
Genetic and Metabolic Central Laboratory, Birth Defect Prevention Research Institute, Maternal and Child Health Hospital, Children's Hospital of Guangxi Zhuang Autonomous Region, Nanning, 530002, China.
BMC Genomics. 2024 Feb 16;25(1):183. doi: 10.1186/s12864-024-10056-0.
Ovarian cancer (OC) has the worst prognosis among gynecological malignancies, most of which are found to be in advanced stage. Cell reduction surgery based on platinum-based chemotherapy is the current standard of treatment for OC, but patients are prone to relapse and develop drug resistance. The objective of this study was to identify a specific molecular target responsible for platinum chemotherapy resistance in OC.
We screened the protein-coding gene Caldesmon (CALD1), expressed in cisplatin-resistant OC cells in vitro. The prognostic value of CALD1 was evaluated using survival curve analysis in OC patients treated with platinum therapy. The diagnostic value of CALD1 was verified by drawing a Receiver Operating Characteristic (ROC) curve using clinical samples from OC patients. This study analyzed data from various databases including Gene Expression Omnibus (GEO), Human Protein Atlas (HPA), The Cancer Cell Line Encyclopedia (CCLE), The Cancer Genome Atlas (TCGA), GEPIA 2, UALCAN, Kaplan-Meier (KM) plotter, LinkedOmics database, and String. Different expression genes (DEGs) between cisplatin-sensitive and cisplatin-resistant cells were acquired respectively from 5 different datasets of GEO. CALD1 was selected as a common gene from 5 groups DEGs. Online data analysis of HPA and CCLE showed that CALD1 was highly expressed in both normal ovarian tissue and OC. In TCGA database, high expression of CALD1 was associated with disease stage and venous invasion in OC. Patients with high CALD1 expression levels had a worse prognosis under platinum drug intervention, according to Kaplan-Meier (KM) plotter analysis. Analysis of clinical sample data from GEO showed that CALD1 had superior diagnostic value in distinguishing patients with platinum "resistant" and platinum "sensitive" (AUC = 0.816), as well as patients with worse progression-free survival (AUC = 0.741), and those with primary and omental metastases (AUC = 0.811) in ovarian tumor. At last, CYR61 was identified as a potential predictive molecule that may play an important role alongside CALD1 in the development of platinum resistance in OC.
CALD1, as a member of cytoskeletal protein, was associated with poor prognosis of platinum resistance in OC, and could be used as a target protein for mechanism study of platinum resistance in OC.
卵巢癌(OC)在妇科恶性肿瘤中预后最差,大多数病例确诊时已处于晚期。基于铂类化疗的肿瘤细胞减灭术是目前OC的标准治疗方法,但患者容易复发并产生耐药性。本研究的目的是确定导致OC铂类化疗耐药的特定分子靶点。
我们筛选出在体外顺铂耐药的OC细胞中表达的蛋白质编码基因钙调蛋白(CALD1)。使用生存曲线分析评估CALD1在接受铂类治疗的OC患者中的预后价值。通过使用OC患者的临床样本绘制受试者工作特征(ROC)曲线,验证CALD1的诊断价值。本研究分析了来自多个数据库的数据,包括基因表达综合数据库(GEO)、人类蛋白质图谱(HPA)、癌症细胞系百科全书(CCLE)、癌症基因组图谱(TCGA)、GEPIA 2、UALCAN、Kaplan-Meier(KM)绘图仪、LinkedOmics数据库和String。分别从GEO的5个不同数据集中获取顺铂敏感细胞和顺铂耐药细胞之间的差异表达基因(DEG)。CALD1被选为5组DEG中的共同基因。HPA和CCLE的在线数据分析表明,CALD1在正常卵巢组织和OC中均高表达。在TCGA数据库中,CALD1的高表达与OC的疾病分期和静脉侵犯相关。根据Kaplan-Meier(KM)绘图仪分析,CALD1表达水平高的患者在铂类药物干预下预后较差。对来自GEO的临床样本数据的分析表明,CALD1在区分铂“耐药”和铂“敏感”患者(AUC = 0.816)、无进展生存期较差的患者(AUC = 0.741)以及卵巢肿瘤中伴有原发和网膜转移的患者(AUC = 0.811)方面具有卓越的诊断价值。最后,富含半胱氨酸的血管生成素61(CYR61)被确定为一种潜在的预测分子,可能在OC铂耐药的发生过程中与CALD1一起发挥重要作用。
CALD1作为细胞骨架蛋白的一员,与OC铂耐药的不良预后相关,可作为OC铂耐药机制研究的靶蛋白。