Department of Population and Public Health Sciences, Keck School of Medicine of USC, Los Angeles, CA, USA.
Population Sciences of the Pacific Program-Epidemiology, University of Hawaii Cancer Center, Honolulu, HI, USA; Department of Epidemiology, Fielding School of Public Health, University of California, Los Angeles, Los Angeles, CA, USA.
Am J Hum Genet. 2024 Mar 7;111(3):456-472. doi: 10.1016/j.ajhg.2024.01.012. Epub 2024 Feb 16.
The impact of tobacco exposure on health varies by race and ethnicity and is closely tied to internal nicotine dose, a marker of carcinogen uptake. DNA methylation is strongly responsive to smoking status and may mediate health effects, but study of associations with internal dose is limited. We performed a blood leukocyte epigenome-wide association study (EWAS) of urinary total nicotine equivalents (TNEs; a measure of nicotine uptake) and DNA methylation measured using the MethylationEPIC v1.0 BeadChip (EPIC) in six racial and ethnic groups across three cohort studies. In the Multiethnic Cohort Study (discovery, n = 1994), TNEs were associated with differential methylation at 408 CpG sites across >250 genomic regions (p < 9 × 10). The top significant sites were annotated to AHRR, F2RL3, RARA, GPR15, PRSS23, and 2q37.1, all of which had decreasing methylation with increasing TNEs. We identified 45 novel CpG sites, of which 42 were unique to the EPIC array and eight annotated to genes not previously linked with smoking-related DNA methylation. The most significant signal in a novel gene was cg03748458 in MIR383;SGCZ. Fifty-one of the 408 discovery sites were validated in the Singapore Chinese Health Study (n = 340) and the Southern Community Cohort Study (n = 394) (Bonferroni corrected p < 1.23 × 10). Significant heterogeneity by race and ethnicity was detected for CpG sites in MYO1G and CYTH1. Furthermore, TNEs significantly mediated the association between cigarettes per day and DNA methylation at 15 sites (average 22.5%-44.3% proportion mediated). Our multiethnic study highlights the transethnic and ethnic-specific methylation associations with internal nicotine dose, a strong predictor of smoking-related morbidities.
烟草暴露对健康的影响因种族和民族而异,与内部尼古丁剂量密切相关,内部尼古丁剂量是一种致癌物摄入的标志物。DNA 甲基化对吸烟状态反应强烈,可能介导健康影响,但与内部剂量关联的研究有限。我们在三个队列研究中的六个种族和民族群体中进行了尿液总尼古丁等效物(衡量尼古丁摄入的指标)与使用 EPIC 进行的血液白细胞全基因组关联研究(EWAS)。在多民族队列研究(发现组,n=1994)中,TNEs 与超过 250 个基因组区域的 408 个 CpG 位点的差异甲基化相关(p<9×10)。最显著的位点注释到 AHRR、F2RL3、RARA、GPR15、PRSS23 和 2q37.1,这些位点的甲基化随着 TNEs 的增加而减少。我们鉴定了 45 个新的 CpG 位点,其中 42 个是 EPIC 阵列特有的,8 个注释到以前与吸烟相关的 DNA 甲基化没有关联的基因。新基因中最显著的信号是 MIR383 中的 cg03748458;SGCZ。在新加坡华人健康研究(n=340)和南方社区队列研究(n=394)中验证了 408 个发现点中的 51 个(Bonferroni 校正后 p<1.23×10)。在 MYO1G 和 CYTH1 中的 CpG 位点检测到种族和民族的显著异质性。此外,TNEs 显著介导了每天吸烟量与 15 个位点 DNA 甲基化之间的关联(平均中介比例为 22.5%-44.3%)。我们的多民族研究强调了与内部尼古丁剂量的跨民族和种族特异性甲基化关联,内部尼古丁剂量是吸烟相关疾病的一个强有力的预测指标。
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