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镉、吸烟与美国“心脏强健”研究中成年人的血液 DNA 甲基化图谱

Cadmium, Smoking, and Human Blood DNA Methylation Profiles in Adults from the Strong Heart Study.

机构信息

Department of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, New York, USA.

Department of Chronic Diseases Epidemiology, National Center of Epidemiology, Carlos III Health Institute, Madrid, Spain.

出版信息

Environ Health Perspect. 2020 Jun;128(6):67005. doi: 10.1289/EHP6345. Epub 2020 Jun 2.

Abstract

BACKGROUND

The epigenetic effects of individual environmental toxicants in tobacco remain largely unexplored. Cadmium (Cd) has been associated with smoking-related health effects, and its concentration in tobacco smoke is higher in comparison with other metals.

OBJECTIVES

We studied the association of Cd and smoking exposures with human blood DNA methylation (DNAm) profiles. We also evaluated the implication of findings to relevant methylation pathways and the potential contribution of Cd exposure from smoking to explain the association between smoking and site-specific DNAm.

METHODS

We conducted an epigenome-wide association study of urine Cd and self-reported smoking (current and former vs. never, and cumulative smoking dose) with blood DNAm in 790,026 CpGs (methylation sites) measured with the Illumina Infinium Human MethylationEPIC (Illumina Inc.) platform in 2,325 adults 45-74 years of age who participated in the Strong Heart Study in 1989-1991. In a mediation analysis, we estimated the amount of change in DNAm associated with smoking that can be independently attributed to increases in urine Cd concentrations from smoking. We also conducted enrichment analyses and protein-protein interaction networks to explore the biological relevance of the findings.

RESULTS

At a false discovery rate (FDR)-corrected level of 0.05, we found 6 differentially methylated positions (DMPs) for Cd; 288 and 17, respectively, for current and former smoking status; and 77 for cigarette pack-years. Enrichment analyses of these DMPs displayed enrichment of 58 and 6 Gene Ontology and Kyoto Encyclopedia of Genes and Genomes gene sets, respectively, including biological pathways for cancer and cardiovascular disease. In protein-to-protein networks, we observed key proteins in DNAm pathways directly and indirectly connected to Cd- and smoking-DMPs. Among DMPs that were significant for both Cd and current smoking (annotated to PRSS23, AHRR, F2RL3, RARA, and 2q37.1), we found statistically significant contributions of Cd to smoking-related DNAm.

CONCLUSIONS

Beyond replicating well-known smoking epigenetic signatures, we found novel DMPs related to smoking. Moreover, increases in smoking-related Cd exposure were associated with differential DNAm. Our integrative analysis supports a biological link for Cd and smoking-associated health effects, including the possibility that Cd is partly responsible for smoking toxicity through epigenetic changes. https://doi.org/10.1289/EHP6345.

摘要

背景

个体环境毒物的表观遗传效应在烟草中仍很大程度上未被探索。镉(Cd)与与吸烟相关的健康影响有关,并且其在烟草烟雾中的浓度与其他金属相比更高。

目的

我们研究了 Cd 和吸烟暴露与人类血液 DNA 甲基化(DNAm)谱之间的关联。我们还评估了这些发现对相关甲基化途径的意义,以及吸烟引起的 Cd 暴露对解释吸烟与特定部位 DNAm 之间关联的潜在贡献。

方法

我们对 790026 个 CpG(甲基化位点)进行了尿液 Cd 和自我报告的吸烟(当前和过去与从不吸烟,以及累积吸烟剂量)与血液 DNAm 的全基因组关联研究,这些 CpG 是使用 Illumina Infinium Human MethylationEPIC(Illumina Inc.)平台在 2325 名年龄在 45-74 岁的成年人中测量的,他们于 1989-1991 年参加了 Strong Heart 研究。在中介分析中,我们估计了与吸烟相关的 DNAm 变化量,这些变化量可以归因于吸烟引起的尿液 Cd 浓度升高。我们还进行了富集分析和蛋白质-蛋白质相互作用网络分析,以探索这些发现的生物学相关性。

结果

在 FDR 校正水平为 0.05 时,我们发现了 6 个 Cd 差异甲基化位置(DMP);分别为当前吸烟和过去吸烟状态的 288 个和 17 个,以及吸烟包年数的 77 个。这些 DMP 的富集分析显示,分别有 58 个和 6 个基因本体论和京都基因与基因组百科全书基因集富集,包括癌症和心血管疾病的生物学途径。在蛋白质-蛋白质网络中,我们观察到 DNAm 途径中的关键蛋白直接和间接地与 Cd 和吸烟 DMP 相关联。在与 Cd 和当前吸烟均显著相关的 DMP(注释为 PRSS23、AHRR、F2RL3、RARA 和 2q37.1)中,我们发现 Cd 对与吸烟相关的 DNAm 有统计学显著贡献。

结论

除了复制众所周知的吸烟表观遗传特征外,我们还发现了与吸烟相关的新的 DMP。此外,吸烟相关 Cd 暴露的增加与 DNAm 的差异相关。我们的综合分析支持 Cd 与吸烟相关健康影响之间的生物学联系,包括 Cd 通过表观遗传变化部分导致吸烟毒性的可能性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/336c/7265996/fa2798c6b4d0/ehp6345_f1.jpg

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