Průša Jiří, Cifra Michal
Institute of Photonics and Electronics of the Czech Academy of Sciences, Prague, 18200, Czechia.
Data Brief. 2023 Nov 4;52:109765. doi: 10.1016/j.dib.2023.109765. eCollection 2024 Feb.
We present trajectories from non-equilibrium (in electric field) molecular dynamics (MD) simulations of a kinesin motor domain on tubulin heterodimers with two tubulin heterodimers forming neighbouring microtubule protofilaments. The trajectories are for no field (long equilibrium simulation), for four different electric field orientations (X, -X, Y, -Y) and for the X electric field at four different field strengths. We also provide a trajectory for larger simulation box. Our data enable to analyze the electric field effects on kinesin, which ultimately leads to kinesin detachment. This data set was used to understand the effect of electric field orientation and field strength on the kinetics and energetics of the electro-detachment of kinesin [1].
我们展示了在电场中对驱动蛋白运动结构域进行非平衡分子动力学(MD)模拟的轨迹,该驱动蛋白运动结构域位于微管蛋白异二聚体上,两个微管蛋白异二聚体形成相邻的微管原纤维。这些轨迹包括无电场情况(长时间平衡模拟)、四种不同电场方向(X、-X、Y、-Y)以及X电场在四种不同场强下的情况。我们还提供了一个更大模拟盒的轨迹。我们的数据有助于分析电场对驱动蛋白的影响,这最终导致驱动蛋白脱离。该数据集用于理解电场方向和场强对驱动蛋白电脱离动力学和能量学的影响[1]。