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Whole genome sequencing of a family with autosomal dominant features within the oculoauriculovertebral spectrum.

作者信息

Petrin A L, Machado-Paula L A, Hinkle A, Hovey L, Awotoye W, Chimenti M, Darbro B, Ribeiro-Bicudo L A, Dabdoub S M, Peter T, Breheny P, Murray J, Van Otterloo E, Rengasamy Venugopalan S, Moreno-Uribe L M

机构信息

College of Dentistry and Dental Clinics, University of Iowa, Iowa City, IA, USA.

Carver College of Medicine, University of Iowa, Iowa City, IA, USA.

出版信息

medRxiv. 2024 Jul 15:2024.02.07.24301824. doi: 10.1101/2024.02.07.24301824.


DOI:10.1101/2024.02.07.24301824
PMID:38370836
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC10871465/
Abstract

BACKGROUND: Oculoauriculovertebral Spectrum (OAVS) encompasses abnormalities on derivatives from the first and second pharyngeal arches including macrostomia, hemifacial microsomia, micrognathia, preauricular tags, ocular and vertebral anomalies. We present genetic findings on a three-generation family affected with macrostomia, preauricular tags and uni- or bilateral ptosis following an autosomal dominant pattern. METHODS: We generated whole genome sequencing data for the proband, affected parent and unaffected paternal grandparent followed by Sanger sequencing on 23 family members for the top 10 candidate genes: and We performed parent and sibling-based transmission disequilibrium tests and burden analysis via a penalized linear mixed model, for segregation and mutation burden respectively. Next, via bioinformatic tools we predicted protein function, mutation pathogenicity and pathway enrichment to investigate the biological relevance of mutations identified. RESULTS: Rare missense mutations in and showed the best segregation with the OAV phenotypes in this family. When considering any of the 3 OAVS phenotypes as an outcome, had the strongest associations in parent-TDTs and sib-TDTs (p=0.025, p=0.052) (unadjusted p-values). Burden analysis identified (RC=0.87) and (RC=0.98) strongly associated with OAVS severity. Using phenotype-specific outcomes, sib-TDTs identified with uni- or bilateral ptosis (p=0.049) and ear tags (p=0.01), and and with ear tags (both p<0.01). CONCLUSION: , , and are strongly associated to OAVS phenotypes. has been previously associated with OAVS ear malformations and is co-expressed with during ear development. Efforts to strengthen the genotype-phenotype co-relation underlying the OAVS are key to discover etiology, family counseling and prevention.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2417/11249291/d8c2a4142a39/nihpp-2024.02.07.24301824v3-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2417/11249291/d8c2a4142a39/nihpp-2024.02.07.24301824v3-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2417/11249291/d8c2a4142a39/nihpp-2024.02.07.24301824v3-f0001.jpg

相似文献

[1]
Whole genome sequencing of a family with autosomal dominant features within the oculoauriculovertebral spectrum.

medRxiv. 2024-7-15

[2]
Oculo-auriculo-vertebral spectrum: clinical and molecular analysis of 51 patients.

Eur J Med Genet. 2015-9

[3]
Macrostomia, preauricular tags, and external ophthalmoplegia: a new autosomal dominant syndrome within the oculoauriculovertebral spectrum?

Cleft Palate Craniofac J. 2006-7

[4]
Oculo Auriculo Vertebral Spectrum

2025-1

[5]
Investigation of Genetic Causes in a Developmental Disorder: Oculoauriculovertebral Spectrum.

Cleft Palate Craniofac J. 2022-9

[6]
Mutations in , encoding the myelin transcription factor 1, are a rare cause of OAVS.

J Med Genet. 2016-11

[7]
Autosomal dominant oculoauriculovertebral spectrum and 14q23.1 microduplication.

Am J Med Genet A. 2013-6-21

[8]
Description of a family with X-linked oculo-auriculo-vertebral spectrum associated with polyalanine tract expansion in ZIC3.

Clin Genet. 2020-10

[9]
Syndromes of the first and second pharyngeal arches: A review.

Am J Med Genet A. 2009-8

[10]
Genome-Wide DNA Methylation Analysis of a Cohort of 41 Patients Affected by Oculo-Auriculo-Vertebral Spectrum (OAVS).

Int J Mol Sci. 2021-1-26

本文引用的文献

[1]
Accurate proteome-wide missense variant effect prediction with AlphaMissense.

Science. 2023-9-22

[2]
Identification of novel mutations in EYA3 and EFTUD2 in a family with craniofacial microsomia: evidence of digenic inheritance.

Front Med. 2023-10

[3]
Isolated bilateral macrostomia: literature review and case report.

Eur J Paediatr Dent. 2023-2

[4]
Expanding the Etiology of Oculo-Auriculo-Vertebral Spectrum: A Novel Interstitial Microdeletion at 1p36.

Int J Mol Sci. 2022-12-20

[5]
Comparison of calling pipelines for whole genome sequencing: an empirical study demonstrating the importance of mapping and alignment.

Sci Rep. 2022-12-13

[6]
Intrinsically Disordered Proteins: An Overview.

Int J Mol Sci. 2022-11-14

[7]
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Nucleic Acids Res. 2023-1-6

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J Med Genet. 2023-6

[9]
InterPro in 2022.

Nucleic Acids Res. 2023-1-6

[10]
Polygenic risk impacts PDGFRA mutation penetrance in non-syndromic cleft lip and palate.

Hum Mol Genet. 2022-7-21

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