Zhao Jieling, Ghallab Ahmed, Hassan Reham, Dooley Steven, Hengstler Jan Georg, Drasdo Dirk
Leibniz Research Centre for Working Environment and Human Factors, Technical University of Dortmund (IfADo), 44139 Dortmund, Germany.
Group SIMBIOTX, INRIA Saclay, 91120 Palaiseau, France.
iScience. 2023 Sep 28;27(2):108077. doi: 10.1016/j.isci.2023.108077. eCollection 2024 Feb 16.
This communication presents a mathematical mechanism-based model of the regenerating liver after drug-induced pericentral lobule damage resolving tissue microarchitecture. The consequence of alternative hypotheses about the interplay of different cell types on regeneration was simulated. Regeneration dynamics has been quantified by the size of the damage-induced dead cell area, the hepatocyte density and the spatial-temporal profile of the different cell types. We use deviations of observed trajectories from the simulated system to identify branching points, at which the systems behavior cannot be explained by the underlying set of hypotheses anymore. Our procedure reflects a successful strategy for generating a fully digital liver twin that, among others, permits to test perturbations from the molecular up to the tissue scale. The model simulations are complementing current knowledge on liver regeneration by identifying gaps in mechanistic relationships and guiding the system toward the most informative (lacking) parameters that can be experimentally addressed.
本通讯展示了一种基于数学机制的模型,用于模拟药物诱导中央小叶损伤后再生肝脏修复组织微结构的过程。模拟了关于不同细胞类型相互作用对再生影响的替代假设的结果。通过损伤诱导的死细胞区域大小、肝细胞密度以及不同细胞类型的时空分布来量化再生动力学。我们利用观察到的轨迹与模拟系统的偏差来识别分支点,在这些点上,系统行为无法再用基础假设集来解释。我们的方法反映了一种成功策略,可生成一个全数字肝脏模型,除其他功能外,还能测试从分子尺度到组织尺度的扰动。模型模拟通过识别机制关系中的差距并引导系统获取可通过实验研究的最具信息价值(缺失)的参数,对当前肝脏再生知识进行补充。